Cluster: HRGMv2_1762_CGC11
🧬 Cluster Details
- Gene Count: 4
- CAZyme Count: 2
- Substrate:
- Genome ID: HRGMv2_1762
- CGC Family ID: CGCFAM_01193
- Continent: Asia
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | HRGMv2_1762_440 | HRGMv2_1762_440_1 | 2 | 910 | - | GT2 |
| CAZyme | HRGMv2_1762_440 | HRGMv2_1762_440_2 | 921 | 2837 | - | CE4 | GH153 |
| TC | HRGMv2_1762_440 | HRGMv2_1762_440_3 | 2859 | 5276 | - | 1.B.55.1.3 |
| TC | HRGMv2_1762_440 | HRGMv2_1762_440_4 | 5486 | 6229 | - | 3.A.1.14.8 |
Gene ID: HRGMv2_1762_440_1
Type: CAZyme
Location: 2 - 910 (-)
Type: CAZyme
Location: 2 - 910 (-)
Gene ID: HRGMv2_1762_440_2
Type: CAZyme
Location: 921 - 2837 (-)
Type: CAZyme
Location: 921 - 2837 (-)
Gene ID: HRGMv2_1762_440_3
Type: TC
Location: 2859 - 5276 (-)
Type: TC
Location: 2859 - 5276 (-)
Gene ID: HRGMv2_1762_440_4
Type: TC
Location: 5486 - 6229 (-)
Type: TC
Location: 5486 - 6229 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Pasteurellaceae
Genus
Haemophilus_D
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| HRGMv2_1762_440_4 | vegan > omnivore | 1.64362 | 0.00732 |