Cluster: HRGMv2_1749_CGC9
🧬 Cluster Details
- Gene Count: 3
- CAZyme Count: 1
- Substrate:
- Genome ID: HRGMv2_1749
- Continent: Asia
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_1749_6 | HRGMv2_1749_6_120 | 103158 | 103544 | - | 1.A.22.1.1 |
| TC | HRGMv2_1749_6 | HRGMv2_1749_6_121 | 103623 | 104999 | - | 2.A.38.1.1 |
| CAZyme | HRGMv2_1749_6 | HRGMv2_1749_6_122 | 104996 | 105811 | - | GT2 |
Gene ID: HRGMv2_1749_6_120
Type: TC
Location: 103158 - 103544 (-)
Type: TC
Location: 103158 - 103544 (-)
Gene ID: HRGMv2_1749_6_121
Type: TC
Location: 103623 - 104999 (-)
Type: TC
Location: 103623 - 104999 (-)
Gene ID: HRGMv2_1749_6_122
Type: CAZyme
Location: 104996 - 105811 (-)
Type: CAZyme
Location: 104996 - 105811 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Pasteurellaceae
Genus
Haemophilus_D
Species
Haemophilus_D sp959600045
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| HRGMv2_1749_6_120 | vegan > omnivore | 1.82252 | 0.01786 |
| HRGMv2_1749_6_120 | vegetarian > omnivore | 3.17947 | 0.01164 |
| HRGMv2_1749_6_120 | vegetarian > vegan | 1.35695 | 0.04544 |
| HRGMv2_1749_6_121 | vegetarian > omnivore | 1.30542 | 0.00711 |
| HRGMv2_1749_6_122 | vegan > omnivore | 1.64596 | 0.01786 |
| HRGMv2_1749_6_122 | vegetarian > omnivore | 1.03688 | 0.01164 |