Cluster: HRGMv2_1749_CGC8
🧬 Cluster Details
- Gene Count: 4
- CAZyme Count: 2
- Substrate:
- Genome ID: HRGMv2_1749
- Continent: Asia
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_1749_6 | HRGMv2_1749_6_37 | 41155 | 42234 | - | 1.B.1.3.3 |
| CAZyme | HRGMv2_1749_6 | HRGMv2_1749_6_38 | 42400 | 43353 | - | GT9 |
| TC | HRGMv2_1749_6 | HRGMv2_1749_6_39 | 43350 | 44255 | - | 2.A.7.3.58 |
| CAZyme | HRGMv2_1749_6 | HRGMv2_1749_6_40 | 44252 | 45295 | - | GT9 |
Gene ID: HRGMv2_1749_6_37
Type: TC
Location: 41155 - 42234 (-)
Type: TC
Location: 41155 - 42234 (-)
Gene ID: HRGMv2_1749_6_38
Type: CAZyme
Location: 42400 - 43353 (-)
Type: CAZyme
Location: 42400 - 43353 (-)
Gene ID: HRGMv2_1749_6_39
Type: TC
Location: 43350 - 44255 (-)
Type: TC
Location: 43350 - 44255 (-)
Gene ID: HRGMv2_1749_6_40
Type: CAZyme
Location: 44252 - 45295 (-)
Type: CAZyme
Location: 44252 - 45295 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Pasteurellaceae
Genus
Haemophilus_D
Species
Haemophilus_D sp959600045
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| HRGMv2_1749_6_38 | vegan > omnivore | 1.20750 | 0.01786 |
| HRGMv2_1749_6_38 | vegetarian > omnivore | 1.58481 | 0.01164 |