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Cluster: HRGMv2_1749_CGC7

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC HRGMv2_1749_6 HRGMv2_1749_6_26 27529 28419 + 3.A.1.14.1
TC HRGMv2_1749_6 HRGMv2_1749_6_27 28419 29408 + 3.A.1.14.1
TC HRGMv2_1749_6 HRGMv2_1749_6_28 29408 30391 + 3.A.1.14.1
TC HRGMv2_1749_6 HRGMv2_1749_6_29 30391 31158 + 3.A.1.14.8
TC HRGMv2_1749_6 HRGMv2_1749_6_30 31369 33786 + 1.B.55.1.3
CAZyme HRGMv2_1749_6 HRGMv2_1749_6_31 33808 35724 + CE4 | GH153
CAZyme HRGMv2_1749_6 HRGMv2_1749_6_32 35734 36975 + GT2
Gene ID: HRGMv2_1749_6_26
Type: TC
Location: 27529 - 28419 (+)
Gene ID: HRGMv2_1749_6_27
Type: TC
Location: 28419 - 29408 (+)
Gene ID: HRGMv2_1749_6_28
Type: TC
Location: 29408 - 30391 (+)
Gene ID: HRGMv2_1749_6_29
Type: TC
Location: 30391 - 31158 (+)
Gene ID: HRGMv2_1749_6_30
Type: TC
Location: 31369 - 33786 (+)
Gene ID: HRGMv2_1749_6_31
Type: CAZyme
Location: 33808 - 35724 (+)
Gene ID: HRGMv2_1749_6_32
Type: CAZyme
Location: 35734 - 36975 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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Differentially Abundant Genes

Gene ID Condition Pair log2FC FDR P-value
HRGMv2_1749_6_26 vegetarian > omnivore 1.44251 0.01164
HRGMv2_1749_6_27 vegetarian > omnivore 1.42002 0.01164

🧭 Explore Read Mapping of CGC

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