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Cluster: HRGMv2_1749_CGC6

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC HRGMv2_1749_5 HRGMv2_1749_5_194 203621 205459 + 3.A.18.1.1
CAZyme HRGMv2_1749_5 HRGMv2_1749_5_195 205555 206949 + GH23
NULL(UNKNOWN) HRGMv2_1749_5 HRGMv2_1749_5_196 207005 207148 + NULL(UNKNOWN)
[View Structural Homologs]
pfam HRGMv2_1749_5 HRGMv2_1749_5_197 207196 208164 - TbpB_B_D
TC HRGMv2_1749_5 HRGMv2_1749_5_198 208322 210622 + 1.B.14.2.1
pfam HRGMv2_1749_5 HRGMv2_1749_5_199 210688 211011 - Ribosomal_S30AE
TC HRGMv2_1749_5 HRGMv2_1749_5_200 211254 212624 - 2.A.25.1.4
Gene ID: HRGMv2_1749_5_194
Type: TC
Location: 203621 - 205459 (+)
Gene ID: HRGMv2_1749_5_195
Type: CAZyme
Location: 205555 - 206949 (+)
Gene ID: HRGMv2_1749_5_196
Type:
Location: 207005 - 207148 (+)
Gene ID: HRGMv2_1749_5_197
Type: pfam
Location: 207196 - 208164 (-)
Gene ID: HRGMv2_1749_5_198
Type: TC
Location: 208322 - 210622 (+)
Gene ID: HRGMv2_1749_5_199
Type: pfam
Location: 210688 - 211011 (-)
Gene ID: HRGMv2_1749_5_200
Type: TC
Location: 211254 - 212624 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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Differentially Abundant Genes

Gene ID Condition Pair log2FC FDR P-value
HRGMv2_1749_5_195 vegetarian > omnivore 1.59803 0.01164
HRGMv2_1749_5_196 vegetarian > omnivore 1.79630 0.01164
HRGMv2_1749_5_196 vegetarian > vegan 1.01415 0.04544

🧭 Explore Read Mapping of CGC

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