Cluster: HRGMv2_1749_CGC4
🧬 Cluster Details
- Gene Count: 6
- CAZyme Count: 2
- Substrate:
- Genome ID: HRGMv2_1749
- Continent: Asia
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_1749_4 | HRGMv2_1749_4_25 | 26444 | 27388 | + | 2.A.16.1.2 |
| TF | HRGMv2_1749_4 | HRGMv2_1749_4_26 | 27467 | 28180 | - | GntR |
| CAZyme | HRGMv2_1749_4 | HRGMv2_1749_4_27 | 28373 | 29878 | + | GH77 |
| CAZyme | HRGMv2_1749_4 | HRGMv2_1749_4_28 | 29878 | 32145 | + | GT35 |
| pfam | HRGMv2_1749_4 | HRGMv2_1749_4_29 | 32155 | 32946 | + | Exo_endo_phos |
| TC | HRGMv2_1749_4 | HRGMv2_1749_4_30 | 32957 | 34621 | + | 4.A.1.1.11 |
Gene ID: HRGMv2_1749_4_25
Type: TC
Location: 26444 - 27388 (+)
Type: TC
Location: 26444 - 27388 (+)
Gene ID: HRGMv2_1749_4_26
Type: TF
Location: 27467 - 28180 (-)
Type: TF
Location: 27467 - 28180 (-)
Gene ID: HRGMv2_1749_4_27
Type: CAZyme
Location: 28373 - 29878 (+)
Type: CAZyme
Location: 28373 - 29878 (+)
Gene ID: HRGMv2_1749_4_28
Type: CAZyme
Location: 29878 - 32145 (+)
Type: CAZyme
Location: 29878 - 32145 (+)
Gene ID: HRGMv2_1749_4_29
Type: pfam
Location: 32155 - 32946 (+)
Type: pfam
Location: 32155 - 32946 (+)
Gene ID: HRGMv2_1749_4_30
Type: TC
Location: 32957 - 34621 (+)
Type: TC
Location: 32957 - 34621 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Pasteurellaceae
Genus
Haemophilus_D
Species
Haemophilus_D sp959600045
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| HRGMv2_1749_4_30 | vegan > omnivore | 1.25894 | 0.01786 |