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Cluster: HRGMv2_1749_CGC3

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC HRGMv2_1749_3 HRGMv2_1749_3_6 4098 4403 + 9.B.21.2.1
TC HRGMv2_1749_3 HRGMv2_1749_3_7 4403 6268 + 2.A.16.2.2
pfam HRGMv2_1749_3 HRGMv2_1749_3_8 6310 7851 - PFL-like | YjjI-like
TC HRGMv2_1749_3 HRGMv2_1749_3_9 8042 8707 + 2.A.115.2.7
CAZyme HRGMv2_1749_3 HRGMv2_1749_3_10 8657 9688 - GT9
Gene ID: HRGMv2_1749_3_6
Type: TC
Location: 4098 - 4403 (+)
Gene ID: HRGMv2_1749_3_7
Type: TC
Location: 4403 - 6268 (+)
Gene ID: HRGMv2_1749_3_8
Type: pfam
Location: 6310 - 7851 (-)
Gene ID: HRGMv2_1749_3_9
Type: TC
Location: 8042 - 8707 (+)
Gene ID: HRGMv2_1749_3_10
Type: CAZyme
Location: 8657 - 9688 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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Differentially Abundant Genes

Gene ID Condition Pair log2FC FDR P-value
HRGMv2_1749_3_9 vegan > omnivore 1.24585 0.01786
HRGMv2_1749_3_9 vegetarian > omnivore 1.18261 0.01164
HRGMv2_1749_3_10 vegan > omnivore 1.34402 0.01786
HRGMv2_1749_3_10 vegetarian > omnivore 1.25536 0.01164

🧭 Explore Read Mapping of CGC

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