Cluster: HRGMv2_1749_CGC20
🧬 Cluster Details
- Gene Count: 4
- CAZyme Count: 1
- Substrate:
- Genome ID: HRGMv2_1749
- Continent: Asia
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_1749_15 | HRGMv2_1749_15_125 | 137166 | 138518 | - | 2.A.8.1.12 |
| pfam | HRGMv2_1749_15 | HRGMv2_1749_15_126 | 138869 | 139558 | - | RNase_T |
| STP | HRGMv2_1749_15 | HRGMv2_1749_15_127 | 139569 | 139976 | - | Glyoxalase |
| CAZyme | HRGMv2_1749_15 | HRGMv2_1749_15_128 | 140267 | 141931 | + | PL1 |
Gene ID: HRGMv2_1749_15_125
Type: TC
Location: 137166 - 138518 (-)
Type: TC
Location: 137166 - 138518 (-)
Gene ID: HRGMv2_1749_15_126
Type: pfam
Location: 138869 - 139558 (-)
Type: pfam
Location: 138869 - 139558 (-)
Gene ID: HRGMv2_1749_15_127
Type: STP
Location: 139569 - 139976 (-)
Type: STP
Location: 139569 - 139976 (-)
Gene ID: HRGMv2_1749_15_128
Type: CAZyme
Location: 140267 - 141931 (+)
Type: CAZyme
Location: 140267 - 141931 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Pasteurellaceae
Genus
Haemophilus_D
Species
Haemophilus_D sp959600045
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| HRGMv2_1749_15_126 | vegetarian > vegan | 1.01399 | 0.04246 |