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Cluster: HRGMv2_1749_CGC18

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC HRGMv2_1749_15 HRGMv2_1749_15_1 3 1991 + 1.B.40.1.5
CAZyme HRGMv2_1749_15 HRGMv2_1749_15_2 2141 3325 - GT2
STP HRGMv2_1749_15 HRGMv2_1749_15_3 3545 4915 + Pyr_redox_2
peptidase HRGMv2_1749_15 HRGMv2_1749_15_4 4984 5811 - C44.UPW
TC HRGMv2_1749_15 HRGMv2_1749_15_5 6030 7346 - 2.A.1.15.11
TC HRGMv2_1749_15 HRGMv2_1749_15_6 7361 8068 - 2.A.88.8.6
TC HRGMv2_1749_15 HRGMv2_1749_15_7 8310 10565 + 1.B.14.1.3
Gene ID: HRGMv2_1749_15_1
Type: TC
Location: 3 - 1991 (+)
Gene ID: HRGMv2_1749_15_2
Type: CAZyme
Location: 2141 - 3325 (-)
Gene ID: HRGMv2_1749_15_3
Type: STP
Location: 3545 - 4915 (+)
Gene ID: HRGMv2_1749_15_4
Type: peptidase
Location: 4984 - 5811 (-)
Gene ID: HRGMv2_1749_15_5
Type: TC
Location: 6030 - 7346 (-)
Gene ID: HRGMv2_1749_15_6
Type: TC
Location: 7361 - 8068 (-)
Gene ID: HRGMv2_1749_15_7
Type: TC
Location: 8310 - 10565 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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Differentially Abundant Genes

Gene ID Condition Pair log2FC FDR P-value
HRGMv2_1749_15_4 vegan > omnivore 1.89931 0.01786
HRGMv2_1749_15_4 vegetarian > omnivore 1.24983 0.01164

🧭 Explore Read Mapping of CGC

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