Cluster: HRGMv2_1749_CGC17
🧬 Cluster Details
- Gene Count: 5
- CAZyme Count: 1
- Substrate:
- Genome ID: HRGMv2_1749
- Continent: Asia
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_1749_14 | HRGMv2_1749_14_3 | 1962 | 2219 | + | 8.A.8.1.1 |
| TC | HRGMv2_1749_14 | HRGMv2_1749_14_4 | 2299 | 4026 | + | 8.A.7.1.1 |
| TC | HRGMv2_1749_14 | HRGMv2_1749_14_5 | 4086 | 4586 | + | 4.A.1.1.1 |
| pfam | HRGMv2_1749_14 | HRGMv2_1749_14_6 | 4659 | 5858 | + | PMI_typeI_cat | MPI_cupin_dom |
| CAZyme | HRGMv2_1749_14 | HRGMv2_1749_14_7 | 5980 | 9006 | + | GH2 |
Gene ID: HRGMv2_1749_14_3
Type: TC
Location: 1962 - 2219 (+)
Type: TC
Location: 1962 - 2219 (+)
Gene ID: HRGMv2_1749_14_4
Type: TC
Location: 2299 - 4026 (+)
Type: TC
Location: 2299 - 4026 (+)
Gene ID: HRGMv2_1749_14_5
Type: TC
Location: 4086 - 4586 (+)
Type: TC
Location: 4086 - 4586 (+)
Gene ID: HRGMv2_1749_14_6
Type: pfam
Location: 4659 - 5858 (+)
Type: pfam
Location: 4659 - 5858 (+)
Gene ID: HRGMv2_1749_14_7
Type: CAZyme
Location: 5980 - 9006 (+)
Type: CAZyme
Location: 5980 - 9006 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Pasteurellaceae
Genus
Haemophilus_D
Species
Haemophilus_D sp959600045
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| HRGMv2_1749_14_3 | vegetarian > omnivore | 1.04101 | 0.01164 |
| HRGMv2_1749_14_5 | vegan > omnivore | 2.80632 | 0.01786 |
| HRGMv2_1749_14_5 | vegetarian > omnivore | 1.65394 | 0.01164 |