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Cluster: HRGMv2_1749_CGC16

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC HRGMv2_1749_12 HRGMv2_1749_12_130 133394 134110 - 9.B.20.2.2
pfam HRGMv2_1749_12 HRGMv2_1749_12_131 134275 135612 + UPF0004 | Radical_SAM | TRAM_2
CAZyme HRGMv2_1749_12 HRGMv2_1749_12_132 135652 137670 + GT41
pfam HRGMv2_1749_12 HRGMv2_1749_12_133 137809 138924 + Semialdhyde_dh | Semialdhyde_dhC
peptidase HRGMv2_1749_12 HRGMv2_1749_12_134 138978 139913 + S33.UNW
TC HRGMv2_1749_12 HRGMv2_1749_12_135 140098 141198 + 5.A.3.4.2
TC HRGMv2_1749_12 HRGMv2_1749_12_136 141227 143704 + 5.A.3.4.2
pfam HRGMv2_1749_12 HRGMv2_1749_12_137 143979 145463 + Aldedh
TC HRGMv2_1749_12 HRGMv2_1749_12_138 145692 147146 + 2.A.47.3.1
Gene ID: HRGMv2_1749_12_130
Type: TC
Location: 133394 - 134110 (-)
Gene ID: HRGMv2_1749_12_131
Type: pfam
Location: 134275 - 135612 (+)
Gene ID: HRGMv2_1749_12_132
Type: CAZyme
Location: 135652 - 137670 (+)
Gene ID: HRGMv2_1749_12_133
Type: pfam
Location: 137809 - 138924 (+)
Gene ID: HRGMv2_1749_12_134
Type: peptidase
Location: 138978 - 139913 (+)
Gene ID: HRGMv2_1749_12_135
Type: TC
Location: 140098 - 141198 (+)
Gene ID: HRGMv2_1749_12_136
Type: TC
Location: 141227 - 143704 (+)
Gene ID: HRGMv2_1749_12_137
Type: pfam
Location: 143979 - 145463 (+)
Gene ID: HRGMv2_1749_12_138
Type: TC
Location: 145692 - 147146 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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Differentially Abundant Genes

Gene ID Condition Pair log2FC FDR P-value
HRGMv2_1749_12_130 vegetarian > omnivore 1.27222 0.01164

🧭 Explore Read Mapping of CGC

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