Cluster: HRGMv2_1749_CGC14
🧬 Cluster Details
- Gene Count: 5
- CAZyme Count: 1
- Substrate:
- Genome ID: HRGMv2_1749
- Continent: Asia
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | HRGMv2_1749_11 | HRGMv2_1749_11_93 | 91456 | 92583 | + | GH102 |
| TC | HRGMv2_1749_11 | HRGMv2_1749_11_94 | 92583 | 93344 | + | 3.A.16.1.3 |
| TC | HRGMv2_1749_11 | HRGMv2_1749_11_95 | 93512 | 94492 | + | 3.A.1.15.5 |
| pfam | HRGMv2_1749_11 | HRGMv2_1749_11_96 | 94611 | 96746 | + | UPF0020 | THUMP | Cons_hypoth95 | Methyltrans_SAM | RlmL_1st |
| TC | HRGMv2_1749_11 | HRGMv2_1749_11_97 | 96782 | 98686 | - | 2.A.37.1.2 |
Gene ID: HRGMv2_1749_11_93
Type: CAZyme
Location: 91456 - 92583 (+)
Type: CAZyme
Location: 91456 - 92583 (+)
Gene ID: HRGMv2_1749_11_94
Type: TC
Location: 92583 - 93344 (+)
Type: TC
Location: 92583 - 93344 (+)
Gene ID: HRGMv2_1749_11_95
Type: TC
Location: 93512 - 94492 (+)
Type: TC
Location: 93512 - 94492 (+)
Gene ID: HRGMv2_1749_11_96
Type: pfam
Location: 94611 - 96746 (+)
Type: pfam
Location: 94611 - 96746 (+)
Gene ID: HRGMv2_1749_11_97
Type: TC
Location: 96782 - 98686 (-)
Type: TC
Location: 96782 - 98686 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Pasteurellaceae
Genus
Haemophilus_D
Species
Haemophilus_D sp959600045
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| HRGMv2_1749_11_93 | vegetarian > omnivore | 1.14759 | 0.01164 |
| HRGMv2_1749_11_94 | vegan > omnivore | 1.52970 | 0.01786 |
| HRGMv2_1749_11_94 | vegetarian > omnivore | 1.52323 | 0.01164 |
| HRGMv2_1749_11_96 | vegan > omnivore | 1.36623 | 0.01786 |
| HRGMv2_1749_11_96 | vegetarian > omnivore | 1.33424 | 0.01164 |