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Cluster: HRGMv2_1749_CGC12

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC HRGMv2_1749_7 HRGMv2_1749_7_92 95751 97580 + 2.A.37.1.1
pfam HRGMv2_1749_7 HRGMv2_1749_7_93 97625 98350 - RIO1 | APH | Kdo
CAZyme HRGMv2_1749_7 HRGMv2_1749_7_94 98428 99483 + GT9
pfam HRGMv2_1749_7 HRGMv2_1749_7_95 99557 99901 - CMD
TF HRGMv2_1749_7 HRGMv2_1749_7_96 100005 100895 + HTH_AraC | HTH_AraC
TC HRGMv2_1749_7 HRGMv2_1749_7_97 100972 102816 + 3.A.1.106.2
Gene ID: HRGMv2_1749_7_92
Type: TC
Location: 95751 - 97580 (+)
Gene ID: HRGMv2_1749_7_93
Type: pfam
Location: 97625 - 98350 (-)
Gene ID: HRGMv2_1749_7_94
Type: CAZyme
Location: 98428 - 99483 (+)
Gene ID: HRGMv2_1749_7_95
Type: pfam
Location: 99557 - 99901 (-)
Gene ID: HRGMv2_1749_7_96
Type: TF
Location: 100005 - 100895 (+)
Gene ID: HRGMv2_1749_7_97
Type: TC
Location: 100972 - 102816 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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Differentially Abundant Genes

Gene ID Condition Pair log2FC FDR P-value
HRGMv2_1749_7_94 vegetarian > vegan 1.08553 0.04246
HRGMv2_1749_7_95 vegan > omnivore 1.24477 0.01786
HRGMv2_1749_7_95 vegetarian > omnivore 1.49677 0.01164
HRGMv2_1749_7_96 vegetarian > vegan 1.14607 0.04246

🧭 Explore Read Mapping of CGC

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