Cluster: HRGMv2_1749_CGC10
🧬 Cluster Details
- Gene Count: 5
- CAZyme Count: 1
- Substrate:
- Genome ID: HRGMv2_1749
- Continent: Asia
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_1749_7 | HRGMv2_1749_7_1 | 3 | 950 | + | 1.B.40.1.5 |
| pfam | HRGMv2_1749_7 | HRGMv2_1749_7_2 | 1083 | 2222 | + | DUF2827 |
| CAZyme | HRGMv2_1749_7 | HRGMv2_1749_7_3 | 2314 | 3846 | - | GT2 |
| TC | HRGMv2_1749_7 | HRGMv2_1749_7_4 | 3855 | 5042 | - | 2.A.33.1.2 |
| TC | HRGMv2_1749_7 | HRGMv2_1749_7_5 | 5252 | 6553 | + | 2.A.26.1.1 |
Gene ID: HRGMv2_1749_7_1
Type: TC
Location: 3 - 950 (+)
Type: TC
Location: 3 - 950 (+)
Gene ID: HRGMv2_1749_7_2
Type: pfam
Location: 1083 - 2222 (+)
Type: pfam
Location: 1083 - 2222 (+)
Gene ID: HRGMv2_1749_7_3
Type: CAZyme
Location: 2314 - 3846 (-)
Type: CAZyme
Location: 2314 - 3846 (-)
Gene ID: HRGMv2_1749_7_4
Type: TC
Location: 3855 - 5042 (-)
Type: TC
Location: 3855 - 5042 (-)
Gene ID: HRGMv2_1749_7_5
Type: TC
Location: 5252 - 6553 (+)
Type: TC
Location: 5252 - 6553 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Pasteurellaceae
Genus
Haemophilus_D
Species
Haemophilus_D sp959600045
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| HRGMv2_1749_7_1 | vegetarian > omnivore | 1.20379 | 0.01164 |
| HRGMv2_1749_7_1 | vegetarian > vegan | 1.29421 | 0.04544 |
| HRGMv2_1749_7_2 | vegetarian > vegan | 1.04099 | 0.04246 |