Cluster: HRGMv2_1749_CGC1
🧬 Cluster Details
- Gene Count: 9
- CAZyme Count: 4
- Substrate:
- Genome ID: HRGMv2_1749
- Continent: Asia
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_1749_1 | HRGMv2_1749_1_8 | 4708 | 5481 | - | 3.A.1.14.19 |
| TC | HRGMv2_1749_1 | HRGMv2_1749_1_9 | 5481 | 6530 | - | 3.A.1.14.5 |
| STP | HRGMv2_1749_1 | HRGMv2_1749_1_10 | 6546 | 7661 | - | Peripla_BP_2 |
| pfam | HRGMv2_1749_1 | HRGMv2_1749_1_11 | 7762 | 8901 | - | Cytochrom_C | CCP_MauG |
| CAZyme | HRGMv2_1749_1 | HRGMv2_1749_1_12 | 8981 | 10096 | - | GH103 |
| CAZyme | HRGMv2_1749_1 | HRGMv2_1749_1_13 | 10130 | 10933 | - | GT2 |
| CAZyme | HRGMv2_1749_1 | HRGMv2_1749_1_14 | 10956 | 11837 | - | GT2 |
| NULL(UNKNOWN) | HRGMv2_1749_1 | HRGMv2_1749_1_15 | 11830 | 13029 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| CAZyme | HRGMv2_1749_1 | HRGMv2_1749_1_16 | 13037 | 13807 | - | GT25 |
Gene ID: HRGMv2_1749_1_8
Type: TC
Location: 4708 - 5481 (-)
Type: TC
Location: 4708 - 5481 (-)
Gene ID: HRGMv2_1749_1_9
Type: TC
Location: 5481 - 6530 (-)
Type: TC
Location: 5481 - 6530 (-)
Gene ID: HRGMv2_1749_1_10
Type: STP
Location: 6546 - 7661 (-)
Type: STP
Location: 6546 - 7661 (-)
Gene ID: HRGMv2_1749_1_11
Type: pfam
Location: 7762 - 8901 (-)
Type: pfam
Location: 7762 - 8901 (-)
Gene ID: HRGMv2_1749_1_12
Type: CAZyme
Location: 8981 - 10096 (-)
Type: CAZyme
Location: 8981 - 10096 (-)
Gene ID: HRGMv2_1749_1_13
Type: CAZyme
Location: 10130 - 10933 (-)
Type: CAZyme
Location: 10130 - 10933 (-)
Gene ID: HRGMv2_1749_1_14
Type: CAZyme
Location: 10956 - 11837 (-)
Type: CAZyme
Location: 10956 - 11837 (-)
Gene ID: HRGMv2_1749_1_15
Type:
Location: 11830 - 13029 (-)
Type:
Location: 11830 - 13029 (-)
Gene ID: HRGMv2_1749_1_16
Type: CAZyme
Location: 13037 - 13807 (-)
Type: CAZyme
Location: 13037 - 13807 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Pasteurellaceae
Genus
Haemophilus_D
Species
Haemophilus_D sp959600045
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| HRGMv2_1749_1_10 | vegan > omnivore | 1.65527 | 0.01786 |
| HRGMv2_1749_1_10 | vegetarian > omnivore | 1.12126 | 0.01164 |
| HRGMv2_1749_1_14 | vegetarian > omnivore | 2.06813 | 0.01164 |
| HRGMv2_1749_1_14 | vegetarian > vegan | 1.41461 | 0.04544 |