Cluster: HRGMv2_1748_CGC8
🧬 Cluster Details
- Gene Count: 4
- CAZyme Count: 1
- Substrate:
- Genome ID: HRGMv2_1748
- Continent: Asia
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_1748_15 | HRGMv2_1748_15_14 | 16043 | 17125 | + | 9.B.146.1.6 |
| pfam | HRGMv2_1748_15 | HRGMv2_1748_15_15 | 17141 | 18469 | + | Mur_ligase_C | Mur_ligase_M | MurD-like_N |
| TC | HRGMv2_1748_15 | HRGMv2_1748_15_16 | 18596 | 19621 | + | 2.A.103.1.1 |
| CAZyme | HRGMv2_1748_15 | HRGMv2_1748_15_17 | 19575 | 20681 | + | GT28 |
Gene ID: HRGMv2_1748_15_14
Type: TC
Location: 16043 - 17125 (+)
Type: TC
Location: 16043 - 17125 (+)
Gene ID: HRGMv2_1748_15_15
Type: pfam
Location: 17141 - 18469 (+)
Type: pfam
Location: 17141 - 18469 (+)
Gene ID: HRGMv2_1748_15_16
Type: TC
Location: 18596 - 19621 (+)
Type: TC
Location: 18596 - 19621 (+)
Gene ID: HRGMv2_1748_15_17
Type: CAZyme
Location: 19575 - 20681 (+)
Type: CAZyme
Location: 19575 - 20681 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Succinivibrionaceae
Genus
Succinivibrio
Species
Succinivibrio sp900548485
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.