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Cluster: HRGMv2_1748_CGC3

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC HRGMv2_1748_4 HRGMv2_1748_4_18 20085 22016 - 3.A.1.121.4
NULL(UNKNOWN) HRGMv2_1748_4 HRGMv2_1748_4_19 22027 22881 - NULL(UNKNOWN)
[View Structural Homologs]
pfam HRGMv2_1748_4 HRGMv2_1748_4_20 22960 23319 - HIT | DcpS_C
CAZyme HRGMv2_1748_4 HRGMv2_1748_4_21 23428 24162 + GT2
pfam HRGMv2_1748_4 HRGMv2_1748_4_22 24177 25157 + EamA | EamA
TC HRGMv2_1748_4 HRGMv2_1748_4_23 26293 27291 + 2.A.56.1.2
pfam HRGMv2_1748_4 HRGMv2_1748_4_24 27363 27857 + DctQ
TC HRGMv2_1748_4 HRGMv2_1748_4_25 27858 29123 + 2.A.56.1.1
TC HRGMv2_1748_4 HRGMv2_1748_4_26 30580 31578 + 2.A.56.1.2
pfam HRGMv2_1748_4 HRGMv2_1748_4_27 31650 32144 + DctQ
TC HRGMv2_1748_4 HRGMv2_1748_4_28 32145 33410 + 2.A.56.1.1
CAZyme HRGMv2_1748_4 HRGMv2_1748_4_29 33585 35198 + GT83
pfam HRGMv2_1748_4 HRGMv2_1748_4_30 35191 36228 + 3Beta_HSD | Epimerase | RmlD_sub_bind | GDP_Man_Dehyd
pfam HRGMv2_1748_4 HRGMv2_1748_4_31 36231 37094 + TatD_DNase
TC HRGMv2_1748_4 HRGMv2_1748_4_32 37187 37789 - 2.A.115.2.14
TC HRGMv2_1748_4 HRGMv2_1748_4_33 37803 38576 - 3.A.1.3.18
TC HRGMv2_1748_4 HRGMv2_1748_4_34 38566 39303 - 3.A.1.3.16
TC HRGMv2_1748_4 HRGMv2_1748_4_35 39366 40199 - 3.A.1.3.16
TC HRGMv2_1748_4 HRGMv2_1748_4_36 40216 40950 - 3.A.1.3.16
pfam HRGMv2_1748_4 HRGMv2_1748_4_37 41257 41805 - DsbB
TC HRGMv2_1748_4 HRGMv2_1748_4_38 41830 43422 - 2.A.34.1.1
TC HRGMv2_1748_4 HRGMv2_1748_4_39 43849 45417 - 2.A.34.1.1
Gene ID: HRGMv2_1748_4_18
Type: TC
Location: 20085 - 22016 (-)
Gene ID: HRGMv2_1748_4_19
Type:
Location: 22027 - 22881 (-)
Gene ID: HRGMv2_1748_4_20
Type: pfam
Location: 22960 - 23319 (-)
Gene ID: HRGMv2_1748_4_21
Type: CAZyme
Location: 23428 - 24162 (+)
Gene ID: HRGMv2_1748_4_22
Type: pfam
Location: 24177 - 25157 (+)
Gene ID: HRGMv2_1748_4_23
Type: TC
Location: 26293 - 27291 (+)
Gene ID: HRGMv2_1748_4_24
Type: pfam
Location: 27363 - 27857 (+)
Gene ID: HRGMv2_1748_4_25
Type: TC
Location: 27858 - 29123 (+)
Gene ID: HRGMv2_1748_4_26
Type: TC
Location: 30580 - 31578 (+)
Gene ID: HRGMv2_1748_4_27
Type: pfam
Location: 31650 - 32144 (+)
Gene ID: HRGMv2_1748_4_28
Type: TC
Location: 32145 - 33410 (+)
Gene ID: HRGMv2_1748_4_29
Type: CAZyme
Location: 33585 - 35198 (+)
Gene ID: HRGMv2_1748_4_30
Type: pfam
Location: 35191 - 36228 (+)
Gene ID: HRGMv2_1748_4_31
Type: pfam
Location: 36231 - 37094 (+)
Gene ID: HRGMv2_1748_4_32
Type: TC
Location: 37187 - 37789 (-)
Gene ID: HRGMv2_1748_4_33
Type: TC
Location: 37803 - 38576 (-)
Gene ID: HRGMv2_1748_4_34
Type: TC
Location: 38566 - 39303 (-)
Gene ID: HRGMv2_1748_4_35
Type: TC
Location: 39366 - 40199 (-)
Gene ID: HRGMv2_1748_4_36
Type: TC
Location: 40216 - 40950 (-)
Gene ID: HRGMv2_1748_4_37
Type: pfam
Location: 41257 - 41805 (-)
Gene ID: HRGMv2_1748_4_38
Type: TC
Location: 41830 - 43422 (-)
Gene ID: HRGMv2_1748_4_39
Type: TC
Location: 43849 - 45417 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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