Cluster: HRGMv2_1748_CGC17
🧬 Cluster Details
- Gene Count: 6
- CAZyme Count: 1
- Substrate:
- Genome ID: HRGMv2_1748
- CGC Family ID: CGCFAM_09855
- Continent: Asia
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_1748_60 | HRGMv2_1748_60_1 | 459 | 941 | + | 2.A.56.1.2 |
| TC | HRGMv2_1748_60 | HRGMv2_1748_60_2 | 947 | 2224 | + | 2.A.56.1.2 |
| TC | HRGMv2_1748_60 | HRGMv2_1748_60_3 | 2248 | 3228 | + | 2.A.56.1.2 |
| pfam | HRGMv2_1748_60 | HRGMv2_1748_60_4 | 3243 | 4166 | + | 2-Hacid_dh | 2-Hacid_dh_C |
| TF | HRGMv2_1748_60 | HRGMv2_1748_60_5 | 4218 | 5087 | - | HTH_6 |
| CAZyme | HRGMv2_1748_60 | HRGMv2_1748_60_6 | 5232 | 6353 | - | CE9 |
Gene ID: HRGMv2_1748_60_1
Type: TC
Location: 459 - 941 (+)
Type: TC
Location: 459 - 941 (+)
Gene ID: HRGMv2_1748_60_2
Type: TC
Location: 947 - 2224 (+)
Type: TC
Location: 947 - 2224 (+)
Gene ID: HRGMv2_1748_60_3
Type: TC
Location: 2248 - 3228 (+)
Type: TC
Location: 2248 - 3228 (+)
Gene ID: HRGMv2_1748_60_4
Type: pfam
Location: 3243 - 4166 (+)
Type: pfam
Location: 3243 - 4166 (+)
Gene ID: HRGMv2_1748_60_5
Type: TF
Location: 4218 - 5087 (-)
Type: TF
Location: 4218 - 5087 (-)
Gene ID: HRGMv2_1748_60_6
Type: CAZyme
Location: 5232 - 6353 (-)
Type: CAZyme
Location: 5232 - 6353 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Succinivibrionaceae
Genus
Succinivibrio
Species
Succinivibrio sp900548485
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.