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Cluster: HRGMv2_1748_CGC13

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme HRGMv2_1748_26 HRGMv2_1748_26_12 12857 14878 - GH23
TC HRGMv2_1748_26 HRGMv2_1748_26_13 15134 16507 - 2.A.22.5.3
TC HRGMv2_1748_26 HRGMv2_1748_26_14 16524 17894 - 2.A.22.5.3
TC HRGMv2_1748_26 HRGMv2_1748_26_15 17905 19278 - 2.A.22.5.3
pfam HRGMv2_1748_26 HRGMv2_1748_26_16 19362 21641 - KH_1 | S1 | RNase_PH | RNase_PH | RNase_PH_C | RNase_PH_C | PNPase
pfam HRGMv2_1748_26 HRGMv2_1748_26_17 21737 22006 - Ribosomal_S15
TC HRGMv2_1748_26 HRGMv2_1748_26_18 23541 25238 + 2.A.53.3.11
pfam HRGMv2_1748_26 HRGMv2_1748_26_19 25692 26177 - SmpB
TC HRGMv2_1748_26 HRGMv2_1748_26_20 26762 28426 + 3.A.1.120.6
Gene ID: HRGMv2_1748_26_12
Type: CAZyme
Location: 12857 - 14878 (-)
Gene ID: HRGMv2_1748_26_13
Type: TC
Location: 15134 - 16507 (-)
Gene ID: HRGMv2_1748_26_14
Type: TC
Location: 16524 - 17894 (-)
Gene ID: HRGMv2_1748_26_15
Type: TC
Location: 17905 - 19278 (-)
Gene ID: HRGMv2_1748_26_16
Type: pfam
Location: 19362 - 21641 (-)
Gene ID: HRGMv2_1748_26_17
Type: pfam
Location: 21737 - 22006 (-)
Gene ID: HRGMv2_1748_26_18
Type: TC
Location: 23541 - 25238 (+)
Gene ID: HRGMv2_1748_26_19
Type: pfam
Location: 25692 - 26177 (-)
Gene ID: HRGMv2_1748_26_20
Type: TC
Location: 26762 - 28426 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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