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Cluster: HRGMv2_1748_CGC11

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC HRGMv2_1748_24 HRGMv2_1748_24_18 16702 17556 - 9.B.104.1.2
pfam HRGMv2_1748_24 HRGMv2_1748_24_19 17556 18515 - 3Beta_HSD | Epimerase | Polysacc_synt_2 | GDP_Man_Dehyd
CAZyme HRGMv2_1748_24 HRGMv2_1748_24_20 18806 19837 + GT9
CAZyme HRGMv2_1748_24 HRGMv2_1748_24_21 19861 21141 + GT30
pfam HRGMv2_1748_24 HRGMv2_1748_24_22 21160 21720 - Flavodoxin_2
pfam HRGMv2_1748_24 HRGMv2_1748_24_23 21775 22482 - RIO1 | Kdo
CAZyme HRGMv2_1748_24 HRGMv2_1748_24_24 22946 23998 + GT9
Gene ID: HRGMv2_1748_24_18
Type: TC
Location: 16702 - 17556 (-)
Gene ID: HRGMv2_1748_24_19
Type: pfam
Location: 17556 - 18515 (-)
Gene ID: HRGMv2_1748_24_20
Type: CAZyme
Location: 18806 - 19837 (+)
Gene ID: HRGMv2_1748_24_21
Type: CAZyme
Location: 19861 - 21141 (+)
Gene ID: HRGMv2_1748_24_22
Type: pfam
Location: 21160 - 21720 (-)
Gene ID: HRGMv2_1748_24_23
Type: pfam
Location: 21775 - 22482 (-)
Gene ID: HRGMv2_1748_24_24
Type: CAZyme
Location: 22946 - 23998 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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