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Cluster: HRGMv2_1738_CGC3

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme HRGMv2_1738_9 HRGMv2_1738_9_1 229 1185 + GT8
TC HRGMv2_1738_9 HRGMv2_1738_9_2 1269 2888 - 1.B.18.1.2
pfam HRGMv2_1738_9 HRGMv2_1738_9_3 2965 3315 - DUF5061
pfam HRGMv2_1738_9 HRGMv2_1738_9_4 3656 4645 - 3Beta_HSD | Epimerase | Polysacc_synt_2 | RmlD_sub_bind | NAD_binding_10 | GDP_Man_Dehyd
CAZyme HRGMv2_1738_9 HRGMv2_1738_9_5 4943 6268 - GT30
STP HRGMv2_1738_9 HRGMv2_1738_9_6 6455 8173 - Pyr_redox_2
TC HRGMv2_1738_9 HRGMv2_1738_9_7 9134 10138 + 2.A.56.1.2
TC HRGMv2_1738_9 HRGMv2_1738_9_8 10200 12065 + 2.A.56.1.4
Gene ID: HRGMv2_1738_9_1
Type: CAZyme
Location: 229 - 1185 (+)
Gene ID: HRGMv2_1738_9_2
Type: TC
Location: 1269 - 2888 (-)
Gene ID: HRGMv2_1738_9_3
Type: pfam
Location: 2965 - 3315 (-)
Gene ID: HRGMv2_1738_9_4
Type: pfam
Location: 3656 - 4645 (-)
Gene ID: HRGMv2_1738_9_5
Type: CAZyme
Location: 4943 - 6268 (-)
Gene ID: HRGMv2_1738_9_6
Type: STP
Location: 6455 - 8173 (-)
Gene ID: HRGMv2_1738_9_7
Type: TC
Location: 9134 - 10138 (+)
Gene ID: HRGMv2_1738_9_8
Type: TC
Location: 10200 - 12065 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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