Cluster: HRGMv2_1732_CGC7
🧬 Cluster Details
- Gene Count: 13
- CAZyme Count: 1
- Substrate:
- Genome ID: HRGMv2_1732
- CGC Family ID: CGCFAM_04022
- Continent: Asia
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | HRGMv2_1732_6 | HRGMv2_1732_6_5 | 4153 | 5877 | - | GT9 |
| pfam | HRGMv2_1732_6 | HRGMv2_1732_6_6 | 5893 | 7068 | - | T6SS_VgrG3-like_C |
| NULL(UNKNOWN) | HRGMv2_1732_6 | HRGMv2_1732_6_7 | 7415 | 8065 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| TC | HRGMv2_1732_6 | HRGMv2_1732_6_8 | 8351 | 9946 | - | 2.A.6.2.46 |
| TC | HRGMv2_1732_6 | HRGMv2_1732_6_9 | 9943 | 13146 | - | 2.A.6.2.22 |
| TC | HRGMv2_1732_6 | HRGMv2_1732_6_10 | 13153 | 14268 | - | 8.A.1.6.1 |
| NULL(UNKNOWN) | HRGMv2_1732_6 | HRGMv2_1732_6_11 | 14494 | 15132 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| pfam | HRGMv2_1732_6 | HRGMv2_1732_6_12 | 15393 | 16556 | - | XdhC_CoxI | XdhC_C |
| TC | HRGMv2_1732_6 | HRGMv2_1732_6_13 | 16543 | 18789 | - | 3.A.7.7.1 |
| NULL(UNKNOWN) | HRGMv2_1732_6 | HRGMv2_1732_6_14 | 19101 | 19820 | + |
NULL(UNKNOWN)
[View Structural Homologs] |
| pfam | HRGMv2_1732_6 | HRGMv2_1732_6_15 | 20267 | 20923 | + | TraT |
| TC | HRGMv2_1732_6 | HRGMv2_1732_6_16 | 21231 | 23375 | - | 1.B.52.2.1 |
| TC | HRGMv2_1732_6 | HRGMv2_1732_6_17 | 23694 | 25451 | - | 1.B.52.2.1 |
Gene ID: HRGMv2_1732_6_5
Type: CAZyme
Location: 4153 - 5877 (-)
Type: CAZyme
Location: 4153 - 5877 (-)
Gene ID: HRGMv2_1732_6_6
Type: pfam
Location: 5893 - 7068 (-)
Type: pfam
Location: 5893 - 7068 (-)
Gene ID: HRGMv2_1732_6_7
Type:
Location: 7415 - 8065 (-)
Type:
Location: 7415 - 8065 (-)
Gene ID: HRGMv2_1732_6_8
Type: TC
Location: 8351 - 9946 (-)
Type: TC
Location: 8351 - 9946 (-)
Gene ID: HRGMv2_1732_6_9
Type: TC
Location: 9943 - 13146 (-)
Type: TC
Location: 9943 - 13146 (-)
Gene ID: HRGMv2_1732_6_10
Type: TC
Location: 13153 - 14268 (-)
Type: TC
Location: 13153 - 14268 (-)
Gene ID: HRGMv2_1732_6_11
Type:
Location: 14494 - 15132 (-)
Type:
Location: 14494 - 15132 (-)
Gene ID: HRGMv2_1732_6_12
Type: pfam
Location: 15393 - 16556 (-)
Type: pfam
Location: 15393 - 16556 (-)
Gene ID: HRGMv2_1732_6_13
Type: TC
Location: 16543 - 18789 (-)
Type: TC
Location: 16543 - 18789 (-)
Gene ID: HRGMv2_1732_6_14
Type:
Location: 19101 - 19820 (+)
Type:
Location: 19101 - 19820 (+)
Gene ID: HRGMv2_1732_6_15
Type: pfam
Location: 20267 - 20923 (+)
Type: pfam
Location: 20267 - 20923 (+)
Gene ID: HRGMv2_1732_6_16
Type: TC
Location: 21231 - 23375 (-)
Type: TC
Location: 21231 - 23375 (-)
Gene ID: HRGMv2_1732_6_17
Type: TC
Location: 23694 - 25451 (-)
Type: TC
Location: 23694 - 25451 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Desulfobacterota
Class
Desulfovibrionia
Order
Desulfovibrionales
Family
Desulfovibrionaceae
Genus
Desulfovibrio
Species
Desulfovibrio sp019424165
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.