Cluster: HRGMv2_1731_CGC16
🧬 Cluster Details
- Gene Count: 14
- CAZyme Count: 4
- Substrate:
- Genome ID: HRGMv2_1731
- CGC Family ID: CGCFAM_00119
- Continent: Asia
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_1731_7 | HRGMv2_1731_7_16 | 16991 | 17809 | + | 9.B.99.1.2 |
| NULL(UNKNOWN) | HRGMv2_1731_7 | HRGMv2_1731_7_17 | 18040 | 19116 | + |
NULL(UNKNOWN)
[View Structural Homologs] |
| TC | HRGMv2_1731_7 | HRGMv2_1731_7_18 | 19599 | 20309 | - | 3.A.1.4.10 |
| TC | HRGMv2_1731_7 | HRGMv2_1731_7_19 | 20313 | 21083 | - | 3.A.1.4.10 |
| TC | HRGMv2_1731_7 | HRGMv2_1731_7_20 | 21080 | 22090 | - | 3.A.1.4.8 |
| TC | HRGMv2_1731_7 | HRGMv2_1731_7_21 | 22087 | 22992 | - | 3.A.1.4.1 |
| TC | HRGMv2_1731_7 | HRGMv2_1731_7_22 | 23248 | 24369 | - | 3.A.1.4.8 |
| CAZyme | HRGMv2_1731_7 | HRGMv2_1731_7_23 | 24948 | 27110 | + | GH133 |
| CAZyme | HRGMv2_1731_7 | HRGMv2_1731_7_24 | 27196 | 28566 | + | GT4 |
| CAZyme | HRGMv2_1731_7 | HRGMv2_1731_7_25 | 28566 | 30029 | + | GH57 |
| CAZyme | HRGMv2_1731_7 | HRGMv2_1731_7_26 | 30077 | 34342 | + | GT3 | GT35 |
| pfam | HRGMv2_1731_7 | HRGMv2_1731_7_27 | 34953 | 35810 | - | HK |
| NULL(UNKNOWN) | HRGMv2_1731_7 | HRGMv2_1731_7_28 | 36192 | 36461 | + |
NULL(UNKNOWN)
[View Structural Homologs] |
| TC | HRGMv2_1731_7 | HRGMv2_1731_7_29 | 36612 | 38720 | + | 1.B.33.2.4 |
Gene ID: HRGMv2_1731_7_16
Type: TC
Location: 16991 - 17809 (+)
Type: TC
Location: 16991 - 17809 (+)
Gene ID: HRGMv2_1731_7_17
Type:
Location: 18040 - 19116 (+)
Type:
Location: 18040 - 19116 (+)
Gene ID: HRGMv2_1731_7_18
Type: TC
Location: 19599 - 20309 (-)
Type: TC
Location: 19599 - 20309 (-)
Gene ID: HRGMv2_1731_7_19
Type: TC
Location: 20313 - 21083 (-)
Type: TC
Location: 20313 - 21083 (-)
Gene ID: HRGMv2_1731_7_20
Type: TC
Location: 21080 - 22090 (-)
Type: TC
Location: 21080 - 22090 (-)
Gene ID: HRGMv2_1731_7_21
Type: TC
Location: 22087 - 22992 (-)
Type: TC
Location: 22087 - 22992 (-)
Gene ID: HRGMv2_1731_7_22
Type: TC
Location: 23248 - 24369 (-)
Type: TC
Location: 23248 - 24369 (-)
Gene ID: HRGMv2_1731_7_23
Type: CAZyme
Location: 24948 - 27110 (+)
Type: CAZyme
Location: 24948 - 27110 (+)
Gene ID: HRGMv2_1731_7_24
Type: CAZyme
Location: 27196 - 28566 (+)
Type: CAZyme
Location: 27196 - 28566 (+)
Gene ID: HRGMv2_1731_7_25
Type: CAZyme
Location: 28566 - 30029 (+)
Type: CAZyme
Location: 28566 - 30029 (+)
Gene ID: HRGMv2_1731_7_26
Type: CAZyme
Location: 30077 - 34342 (+)
Type: CAZyme
Location: 30077 - 34342 (+)
Gene ID: HRGMv2_1731_7_27
Type: pfam
Location: 34953 - 35810 (-)
Type: pfam
Location: 34953 - 35810 (-)
Gene ID: HRGMv2_1731_7_28
Type:
Location: 36192 - 36461 (+)
Type:
Location: 36192 - 36461 (+)
Gene ID: HRGMv2_1731_7_29
Type: TC
Location: 36612 - 38720 (+)
Type: TC
Location: 36612 - 38720 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Desulfobacterota
Class
Desulfovibrionia
Order
Desulfovibrionales
Family
Desulfovibrionaceae
Genus
Desulfovibrio
Species
Desulfovibrio sp900243745
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.