dbCAN Logo

Cluster: HRGMv2_1728_CGC14

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC HRGMv2_1728_46 HRGMv2_1728_46_9 8983 9858 - 3.A.1.7.5
TC HRGMv2_1728_46 HRGMv2_1728_46_10 9870 10757 - 3.A.1.7.1
TC HRGMv2_1728_46 HRGMv2_1728_46_11 10946 11761 - 3.A.1.7.5
TF HRGMv2_1728_46 HRGMv2_1728_46_12 11982 12656 + Trans_reg_C
STP HRGMv2_1728_46 HRGMv2_1728_46_13 12658 14460 + HATPase_c | HisKA | PAS
TC HRGMv2_1728_46 HRGMv2_1728_46_14 14463 15218 + 3.A.1.7.2
pfam HRGMv2_1728_46 HRGMv2_1728_46_15 15218 15901 + PhoU | PhoU
CAZyme HRGMv2_1728_46 HRGMv2_1728_46_16 16102 17052 - GT2
Gene ID: HRGMv2_1728_46_9
Type: TC
Location: 8983 - 9858 (-)
Gene ID: HRGMv2_1728_46_10
Type: TC
Location: 9870 - 10757 (-)
Gene ID: HRGMv2_1728_46_11
Type: TC
Location: 10946 - 11761 (-)
Gene ID: HRGMv2_1728_46_12
Type: TF
Location: 11982 - 12656 (+)
Gene ID: HRGMv2_1728_46_13
Type: STP
Location: 12658 - 14460 (+)
Gene ID: HRGMv2_1728_46_14
Type: TC
Location: 14463 - 15218 (+)
Gene ID: HRGMv2_1728_46_15
Type: pfam
Location: 15218 - 15901 (+)
Gene ID: HRGMv2_1728_46_16
Type: CAZyme
Location: 16102 - 17052 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

Loading chart...

Differentially Abundant Genes

Gene ID Condition Pair log2FC FDR P-value
HRGMv2_1728_46_15 vegetarian > vegan 1.02967 0.03101

🧭 Explore Read Mapping of CGC

← Back to Cluster List