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Cluster: HRGMv2_1728_CGC1

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC HRGMv2_1728_1 HRGMv2_1728_1_20 21348 22607 + 2.A.40.1.4
pfam HRGMv2_1728_1 HRGMv2_1728_1_21 22890 23792 - EamA | EamA
NULL(UNKNOWN) HRGMv2_1728_1 HRGMv2_1728_1_22 23899 24894 - NULL(UNKNOWN)
[View Structural Homologs]
CAZyme HRGMv2_1728_1 HRGMv2_1728_1_23 24979 26061 + GT4
NULL(UNKNOWN) HRGMv2_1728_1 HRGMv2_1728_1_24 26058 26498 + NULL(UNKNOWN)
[View Structural Homologs]
CAZyme HRGMv2_1728_1 HRGMv2_1728_1_25 26506 27666 + GT21
TC HRGMv2_1728_1 HRGMv2_1728_1_26 27733 28923 + 3.A.1.122.1
CAZyme HRGMv2_1728_1 HRGMv2_1728_1_27 28931 30880 + GT4
pfam HRGMv2_1728_1 HRGMv2_1728_1_28 31026 32033 + Acetyltransf_6
CAZyme HRGMv2_1728_1 HRGMv2_1728_1_29 32163 36410 - GT3 | GT35
CAZyme HRGMv2_1728_1 HRGMv2_1728_1_30 36513 37724 - GH57
CAZyme HRGMv2_1728_1 HRGMv2_1728_1_31 37726 39189 - GT4
CAZyme HRGMv2_1728_1 HRGMv2_1728_1_32 39189 41237 - GH133
pfam HRGMv2_1728_1 HRGMv2_1728_1_33 41498 43585 - HD_5
peptidase HRGMv2_1728_1 HRGMv2_1728_1_34 43589 44296 - C93.UPW
TC HRGMv2_1728_1 HRGMv2_1728_1_35 44737 46083 + 3.A.1.109.4
TC HRGMv2_1728_1 HRGMv2_1728_1_36 46208 48511 + 3.A.1.109.3
TC HRGMv2_1728_1 HRGMv2_1728_1_37 48498 50171 + 3.A.1.109.4
Gene ID: HRGMv2_1728_1_20
Type: TC
Location: 21348 - 22607 (+)
Gene ID: HRGMv2_1728_1_21
Type: pfam
Location: 22890 - 23792 (-)
Gene ID: HRGMv2_1728_1_22
Type:
Location: 23899 - 24894 (-)
Gene ID: HRGMv2_1728_1_23
Type: CAZyme
Location: 24979 - 26061 (+)
Gene ID: HRGMv2_1728_1_24
Type:
Location: 26058 - 26498 (+)
Gene ID: HRGMv2_1728_1_25
Type: CAZyme
Location: 26506 - 27666 (+)
Gene ID: HRGMv2_1728_1_26
Type: TC
Location: 27733 - 28923 (+)
Gene ID: HRGMv2_1728_1_27
Type: CAZyme
Location: 28931 - 30880 (+)
Gene ID: HRGMv2_1728_1_28
Type: pfam
Location: 31026 - 32033 (+)
Gene ID: HRGMv2_1728_1_29
Type: CAZyme
Location: 32163 - 36410 (-)
Gene ID: HRGMv2_1728_1_30
Type: CAZyme
Location: 36513 - 37724 (-)
Gene ID: HRGMv2_1728_1_31
Type: CAZyme
Location: 37726 - 39189 (-)
Gene ID: HRGMv2_1728_1_32
Type: CAZyme
Location: 39189 - 41237 (-)
Gene ID: HRGMv2_1728_1_33
Type: pfam
Location: 41498 - 43585 (-)
Gene ID: HRGMv2_1728_1_34
Type: peptidase
Location: 43589 - 44296 (-)
Gene ID: HRGMv2_1728_1_35
Type: TC
Location: 44737 - 46083 (+)
Gene ID: HRGMv2_1728_1_36
Type: TC
Location: 46208 - 48511 (+)
Gene ID: HRGMv2_1728_1_37
Type: TC
Location: 48498 - 50171 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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Differentially Abundant Genes

Gene ID Condition Pair log2FC FDR P-value
HRGMv2_1728_1_35 vegetarian > vegan 2.17898 0.03101

🧭 Explore Read Mapping of CGC

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