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Cluster: HRGMv2_1723_CGC6

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme HRGMv2_1723_5 HRGMv2_1723_5_74 97201 98232 + GT9
pfam HRGMv2_1723_5 HRGMv2_1723_5_75 98494 99318 - Shikimate_DH | Shikimate_dh_N | SDH_C
TC HRGMv2_1723_5 HRGMv2_1723_5_76 101267 103942 - 2.A.6.4.3
NULL(UNKNOWN) HRGMv2_1723_5 HRGMv2_1723_5_77 104128 104817 - NULL(UNKNOWN)
[View Structural Homologs]
pfam HRGMv2_1723_5 HRGMv2_1723_5_78 104889 105137 + HupF_HypC
TC HRGMv2_1723_5 HRGMv2_1723_5_79 105640 106920 - 2.A.56.1.4
TC HRGMv2_1723_5 HRGMv2_1723_5_80 106917 107462 - 2.A.56.1.4
TC HRGMv2_1723_5 HRGMv2_1723_5_81 107565 108572 - 2.A.56.1.4
TF HRGMv2_1723_5 HRGMv2_1723_5_82 108734 110482 - HTH_8
TC HRGMv2_1723_5 HRGMv2_1723_5_83 110740 111861 + 3.D.2.4.1
Gene ID: HRGMv2_1723_5_74
Type: CAZyme
Location: 97201 - 98232 (+)
Gene ID: HRGMv2_1723_5_75
Type: pfam
Location: 98494 - 99318 (-)
Gene ID: HRGMv2_1723_5_76
Type: TC
Location: 101267 - 103942 (-)
Gene ID: HRGMv2_1723_5_77
Type:
Location: 104128 - 104817 (-)
Gene ID: HRGMv2_1723_5_78
Type: pfam
Location: 104889 - 105137 (+)
Gene ID: HRGMv2_1723_5_79
Type: TC
Location: 105640 - 106920 (-)
Gene ID: HRGMv2_1723_5_80
Type: TC
Location: 106917 - 107462 (-)
Gene ID: HRGMv2_1723_5_81
Type: TC
Location: 107565 - 108572 (-)
Gene ID: HRGMv2_1723_5_82
Type: TF
Location: 108734 - 110482 (-)
Gene ID: HRGMv2_1723_5_83
Type: TC
Location: 110740 - 111861 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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