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Cluster: HRGMv2_1723_CGC4

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme HRGMv2_1723_3 HRGMv2_1723_3_207 249605 250723 + GT4
TC HRGMv2_1723_3 HRGMv2_1723_3_208 250747 252096 + 9.B.18.1.3
TC HRGMv2_1723_3 HRGMv2_1723_3_209 252518 253675 + 3.D.7.2.3
TC HRGMv2_1723_3 HRGMv2_1723_3_210 253678 255474 + 3.D.7.2.3
TC HRGMv2_1723_3 HRGMv2_1723_3_211 255485 256177 + 3.D.7.2.3
TC HRGMv2_1723_3 HRGMv2_1723_3_212 256180 256725 + 3.D.7.2.3
Gene ID: HRGMv2_1723_3_207
Type: CAZyme
Location: 249605 - 250723 (+)
Gene ID: HRGMv2_1723_3_208
Type: TC
Location: 250747 - 252096 (+)
Gene ID: HRGMv2_1723_3_209
Type: TC
Location: 252518 - 253675 (+)
Gene ID: HRGMv2_1723_3_210
Type: TC
Location: 253678 - 255474 (+)
Gene ID: HRGMv2_1723_3_211
Type: TC
Location: 255485 - 256177 (+)
Gene ID: HRGMv2_1723_3_212
Type: TC
Location: 256180 - 256725 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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Differentially Abundant Genes

Gene ID Condition Pair log2FC FDR P-value
HRGMv2_1723_3_208 vegan > omnivore 1.13449 0.00508

🧭 Explore Read Mapping of CGC

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