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Cluster: HRGMv2_1723_CGC3

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC HRGMv2_1723_3 HRGMv2_1723_3_80 101370 102797 - 2.A.21.1.1
NULL(UNKNOWN) HRGMv2_1723_3 HRGMv2_1723_3_81 102790 102936 - NULL(UNKNOWN)
[View Structural Homologs]
pfam HRGMv2_1723_3 HRGMv2_1723_3_82 103195 103623 - NTase_sub_bind
TC HRGMv2_1723_3 HRGMv2_1723_3_83 103791 105188 + 1.B.17.1.1
TC HRGMv2_1723_3 HRGMv2_1723_3_84 105254 107428 + 3.A.1.109.3
TC HRGMv2_1723_3 HRGMv2_1723_3_85 107439 108815 + 3.A.1.109.4
peptidase HRGMv2_1723_3 HRGMv2_1723_3_86 108816 109655 + C93.UPW
STP HRGMv2_1723_3 HRGMv2_1723_3_87 109728 111812 + HD | PAS | dCache_1
CAZyme HRGMv2_1723_3 HRGMv2_1723_3_88 111843 113060 + GT4
TC HRGMv2_1723_3 HRGMv2_1723_3_89 113247 114659 + 2.A.35.1.1
Gene ID: HRGMv2_1723_3_80
Type: TC
Location: 101370 - 102797 (-)
Gene ID: HRGMv2_1723_3_81
Type:
Location: 102790 - 102936 (-)
Gene ID: HRGMv2_1723_3_82
Type: pfam
Location: 103195 - 103623 (-)
Gene ID: HRGMv2_1723_3_83
Type: TC
Location: 103791 - 105188 (+)
Gene ID: HRGMv2_1723_3_84
Type: TC
Location: 105254 - 107428 (+)
Gene ID: HRGMv2_1723_3_85
Type: TC
Location: 107439 - 108815 (+)
Gene ID: HRGMv2_1723_3_86
Type: peptidase
Location: 108816 - 109655 (+)
Gene ID: HRGMv2_1723_3_87
Type: STP
Location: 109728 - 111812 (+)
Gene ID: HRGMv2_1723_3_88
Type: CAZyme
Location: 111843 - 113060 (+)
Gene ID: HRGMv2_1723_3_89
Type: TC
Location: 113247 - 114659 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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Differentially Abundant Genes

Gene ID Condition Pair log2FC FDR P-value
HRGMv2_1723_3_81 vegan > omnivore 1.09335 0.00494

🧭 Explore Read Mapping of CGC

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