dbCAN Logo

Cluster: HRGMv2_1723_CGC25

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme HRGMv2_1723_56 HRGMv2_1723_56_53 66008 66769 + GH23
TC HRGMv2_1723_56 HRGMv2_1723_56_54 66759 67754 - 3.A.15.2.1
TC HRGMv2_1723_56 HRGMv2_1723_56_55 67799 68863 + 3.A.15.2.1
NULL(UNKNOWN) HRGMv2_1723_56 HRGMv2_1723_56_56 69072 69653 - NULL(UNKNOWN)
[View Structural Homologs]
pfam HRGMv2_1723_56 HRGMv2_1723_56_57 69855 71261 + NTP_transferase | MannoseP_isomer | Cupin_2 | NTP_transf_3 | ManC_GMP_beta-helix
TC HRGMv2_1723_56 HRGMv2_1723_56_58 71264 72958 + 1.A.1.13.8
peptidase HRGMv2_1723_56 HRGMv2_1723_56_59 73178 74527 + S16.A04
pfam HRGMv2_1723_56 HRGMv2_1723_56_60 74688 75014 + ClpS
TC HRGMv2_1723_56 HRGMv2_1723_56_61 75011 77284 + 3.A.9.1.2
TC HRGMv2_1723_56 HRGMv2_1723_56_62 77689 78447 - 2.A.102.3.1
Gene ID: HRGMv2_1723_56_53
Type: CAZyme
Location: 66008 - 66769 (+)
Gene ID: HRGMv2_1723_56_54
Type: TC
Location: 66759 - 67754 (-)
Gene ID: HRGMv2_1723_56_55
Type: TC
Location: 67799 - 68863 (+)
Gene ID: HRGMv2_1723_56_56
Type:
Location: 69072 - 69653 (-)
Gene ID: HRGMv2_1723_56_57
Type: pfam
Location: 69855 - 71261 (+)
Gene ID: HRGMv2_1723_56_58
Type: TC
Location: 71264 - 72958 (+)
Gene ID: HRGMv2_1723_56_59
Type: peptidase
Location: 73178 - 74527 (+)
Gene ID: HRGMv2_1723_56_60
Type: pfam
Location: 74688 - 75014 (+)
Gene ID: HRGMv2_1723_56_61
Type: TC
Location: 75011 - 77284 (+)
Gene ID: HRGMv2_1723_56_62
Type: TC
Location: 77689 - 78447 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

Loading chart...

Differentially Abundant Genes

Gene ID Condition Pair log2FC FDR P-value
HRGMv2_1723_56_56 vegetarian > omnivore 1.21273 0.00565
HRGMv2_1723_56_56 vegetarian > vegan 1.39199 0.03238

🧭 Explore Read Mapping of CGC

← Back to Cluster List