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Cluster: HRGMv2_1723_CGC12

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme HRGMv2_1723_19 HRGMv2_1723_19_11 12743 13882 - GH3
NULL(UNKNOWN) HRGMv2_1723_19 HRGMv2_1723_19_12 13935 14294 - NULL(UNKNOWN)
[View Structural Homologs]
TC HRGMv2_1723_19 HRGMv2_1723_19_13 14406 15080 + 2.A.53.3.8
pfam HRGMv2_1723_19 HRGMv2_1723_19_14 15486 16031 + DUF305
TC HRGMv2_1723_19 HRGMv2_1723_19_15 16232 17065 + 2.A.7.31.3
TC HRGMv2_1723_19 HRGMv2_1723_19_16 17953 18528 + 2.A.107.1.1
TC HRGMv2_1723_19 HRGMv2_1723_19_17 18588 20042 + 2.A.4.7.5
TC HRGMv2_1723_19 HRGMv2_1723_19_18 20387 21493 - 2.A.6.4.1
TC HRGMv2_1723_19 HRGMv2_1723_19_19 21670 23256 - 2.A.6.4.1
TC HRGMv2_1723_19 HRGMv2_1723_19_20 23453 23794 - 3.A.5.1.1
Gene ID: HRGMv2_1723_19_11
Type: CAZyme
Location: 12743 - 13882 (-)
Gene ID: HRGMv2_1723_19_12
Type:
Location: 13935 - 14294 (-)
Gene ID: HRGMv2_1723_19_13
Type: TC
Location: 14406 - 15080 (+)
Gene ID: HRGMv2_1723_19_14
Type: pfam
Location: 15486 - 16031 (+)
Gene ID: HRGMv2_1723_19_15
Type: TC
Location: 16232 - 17065 (+)
Gene ID: HRGMv2_1723_19_16
Type: TC
Location: 17953 - 18528 (+)
Gene ID: HRGMv2_1723_19_17
Type: TC
Location: 18588 - 20042 (+)
Gene ID: HRGMv2_1723_19_18
Type: TC
Location: 20387 - 21493 (-)
Gene ID: HRGMv2_1723_19_19
Type: TC
Location: 21670 - 23256 (-)
Gene ID: HRGMv2_1723_19_20
Type: TC
Location: 23453 - 23794 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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Differentially Abundant Genes

Gene ID Condition Pair log2FC FDR P-value
HRGMv2_1723_19_13 vegetarian > vegan 1.23614 0.00136

🧭 Explore Read Mapping of CGC

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