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Cluster: HRGMv2_1721_CGC3

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC HRGMv2_1721_1 HRGMv2_1721_1_270 314709 315050 + 3.A.5.1.1
TC HRGMv2_1721_1 HRGMv2_1721_1_271 315247 316833 + 2.A.6.4.1
TC HRGMv2_1721_1 HRGMv2_1721_1_272 316899 318005 + 2.A.6.4.1
TC HRGMv2_1721_1 HRGMv2_1721_1_273 318197 319651 - 2.A.4.7.5
TC HRGMv2_1721_1 HRGMv2_1721_1_274 319713 320288 - 2.A.107.1.1
TC HRGMv2_1721_1 HRGMv2_1721_1_275 320550 321383 - 2.A.7.31.3
pfam HRGMv2_1721_1 HRGMv2_1721_1_276 321582 322127 - DUF305
TC HRGMv2_1721_1 HRGMv2_1721_1_277 322448 323122 - 2.A.53.3.8
NULL(UNKNOWN) HRGMv2_1721_1 HRGMv2_1721_1_278 323234 323593 + NULL(UNKNOWN)
[View Structural Homologs]
CAZyme HRGMv2_1721_1 HRGMv2_1721_1_279 323648 324787 + GH3
Gene ID: HRGMv2_1721_1_270
Type: TC
Location: 314709 - 315050 (+)
Gene ID: HRGMv2_1721_1_271
Type: TC
Location: 315247 - 316833 (+)
Gene ID: HRGMv2_1721_1_272
Type: TC
Location: 316899 - 318005 (+)
Gene ID: HRGMv2_1721_1_273
Type: TC
Location: 318197 - 319651 (-)
Gene ID: HRGMv2_1721_1_274
Type: TC
Location: 319713 - 320288 (-)
Gene ID: HRGMv2_1721_1_275
Type: TC
Location: 320550 - 321383 (-)
Gene ID: HRGMv2_1721_1_276
Type: pfam
Location: 321582 - 322127 (-)
Gene ID: HRGMv2_1721_1_277
Type: TC
Location: 322448 - 323122 (-)
Gene ID: HRGMv2_1721_1_278
Type:
Location: 323234 - 323593 (+)
Gene ID: HRGMv2_1721_1_279
Type: CAZyme
Location: 323648 - 324787 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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Differentially Abundant Genes

Gene ID Condition Pair log2FC FDR P-value
HRGMv2_1721_1_277 vegetarian > vegan 1.16220 0.00110

🧭 Explore Read Mapping of CGC

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