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Cluster: HRGMv2_1721_CGC20

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC HRGMv2_1721_1 HRGMv2_1721_1_2237 2524212 2524970 + 2.A.102.3.1
TC HRGMv2_1721_1 HRGMv2_1721_1_2238 2525366 2527639 - 3.A.9.1.2
pfam HRGMv2_1721_1 HRGMv2_1721_1_2239 2527636 2527962 - ClpS
peptidase HRGMv2_1721_1 HRGMv2_1721_1_2240 2528124 2529473 - S16.A04
TC HRGMv2_1721_1 HRGMv2_1721_1_2241 2529694 2531388 - 1.A.1.13.8
pfam HRGMv2_1721_1 HRGMv2_1721_1_2242 2531391 2532797 - NTP_transferase | MannoseP_isomer | Cupin_2 | NTP_transf_3 | ManC_GMP_beta-helix
TC HRGMv2_1721_1 HRGMv2_1721_1_2243 2532811 2534457 - 9.B.42.1.1
TC HRGMv2_1721_1 HRGMv2_1721_1_2244 2534565 2535629 - 3.A.15.2.1
TC HRGMv2_1721_1 HRGMv2_1721_1_2245 2535859 2536671 + 3.A.15.2.1
CAZyme HRGMv2_1721_1 HRGMv2_1721_1_2246 2536661 2537416 - GH23
Gene ID: HRGMv2_1721_1_2237
Type: TC
Location: 2524212 - 2524970 (+)
Gene ID: HRGMv2_1721_1_2238
Type: TC
Location: 2525366 - 2527639 (-)
Gene ID: HRGMv2_1721_1_2239
Type: pfam
Location: 2527636 - 2527962 (-)
Gene ID: HRGMv2_1721_1_2240
Type: peptidase
Location: 2528124 - 2529473 (-)
Gene ID: HRGMv2_1721_1_2241
Type: TC
Location: 2529694 - 2531388 (-)
Gene ID: HRGMv2_1721_1_2242
Type: pfam
Location: 2531391 - 2532797 (-)
Gene ID: HRGMv2_1721_1_2243
Type: TC
Location: 2532811 - 2534457 (-)
Gene ID: HRGMv2_1721_1_2244
Type: TC
Location: 2534565 - 2535629 (-)
Gene ID: HRGMv2_1721_1_2245
Type: TC
Location: 2535859 - 2536671 (+)
Gene ID: HRGMv2_1721_1_2246
Type: CAZyme
Location: 2536661 - 2537416 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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Differentially Abundant Genes

Gene ID Condition Pair log2FC FDR P-value
HRGMv2_1721_1_2238 vegetarian > omnivore 1.28470 0.00141

🧭 Explore Read Mapping of CGC

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