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Cluster: HRGMv2_1721_CGC11

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme HRGMv2_1721_1 HRGMv2_1721_1_1267 1440210 1441427 - GT4
STP HRGMv2_1721_1 HRGMv2_1721_1_1268 1441459 1443543 - HD | PAS | dCache_1
peptidase HRGMv2_1721_1 HRGMv2_1721_1_1269 1443617 1444459 - C93.UPW
TC HRGMv2_1721_1 HRGMv2_1721_1_1270 1444460 1445836 - 3.A.1.109.4
TC HRGMv2_1721_1 HRGMv2_1721_1_1271 1445847 1448063 - 3.A.1.109.3
TC HRGMv2_1721_1 HRGMv2_1721_1_1272 1448087 1449484 - 3.A.1.109.4
pfam HRGMv2_1721_1 HRGMv2_1721_1_1273 1449772 1450080 + NTase_sub_bind
NULL(UNKNOWN) HRGMv2_1721_1 HRGMv2_1721_1_1274 1450340 1450486 + NULL(UNKNOWN)
[View Structural Homologs]
TC HRGMv2_1721_1 HRGMv2_1721_1_1275 1450479 1451906 + 2.A.21.1.1
Gene ID: HRGMv2_1721_1_1267
Type: CAZyme
Location: 1440210 - 1441427 (-)
Gene ID: HRGMv2_1721_1_1268
Type: STP
Location: 1441459 - 1443543 (-)
Gene ID: HRGMv2_1721_1_1269
Type: peptidase
Location: 1443617 - 1444459 (-)
Gene ID: HRGMv2_1721_1_1270
Type: TC
Location: 1444460 - 1445836 (-)
Gene ID: HRGMv2_1721_1_1271
Type: TC
Location: 1445847 - 1448063 (-)
Gene ID: HRGMv2_1721_1_1272
Type: TC
Location: 1448087 - 1449484 (-)
Gene ID: HRGMv2_1721_1_1273
Type: pfam
Location: 1449772 - 1450080 (+)
Gene ID: HRGMv2_1721_1_1274
Type:
Location: 1450340 - 1450486 (+)
Gene ID: HRGMv2_1721_1_1275
Type: TC
Location: 1450479 - 1451906 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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Differentially Abundant Genes

Gene ID Condition Pair log2FC FDR P-value
HRGMv2_1721_1_1274 vegan > omnivore 1.04059 0.00759

🧭 Explore Read Mapping of CGC

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