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Cluster: HRGMv2_1721_CGC1

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC HRGMv2_1721_1 HRGMv2_1721_1_3 1773 3545 + 2.A.21.9.1
TF HRGMv2_1721_1 HRGMv2_1721_1_4 3940 5319 + HTH_8
NULL(UNKNOWN) HRGMv2_1721_1 HRGMv2_1721_1_5 5391 5771 + NULL(UNKNOWN)
[View Structural Homologs]
TC HRGMv2_1721_1 HRGMv2_1721_1_6 6450 8948 + 1.A.23.1.1
pfam HRGMv2_1721_1 HRGMv2_1721_1_7 8926 9711 + Glucosamine_iso
CAZyme HRGMv2_1721_1 HRGMv2_1721_1_8 10292 11416 + GH23
Gene ID: HRGMv2_1721_1_3
Type: TC
Location: 1773 - 3545 (+)
Gene ID: HRGMv2_1721_1_4
Type: TF
Location: 3940 - 5319 (+)
Gene ID: HRGMv2_1721_1_5
Type:
Location: 5391 - 5771 (+)
Gene ID: HRGMv2_1721_1_6
Type: TC
Location: 6450 - 8948 (+)
Gene ID: HRGMv2_1721_1_7
Type: pfam
Location: 8926 - 9711 (+)
Gene ID: HRGMv2_1721_1_8
Type: CAZyme
Location: 10292 - 11416 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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