Cluster: HRGMv2_1719_CGC4
🧬 Cluster Details
- Gene Count: 12
- CAZyme Count: 6
- Substrate:
- Genome ID: HRGMv2_1719
- CGC Family ID: CGCFAM_00008
- Continent: Asia
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_1719_13 | HRGMv2_1719_13_24 | 25996 | 27159 | - | 2.A.20.1.6 |
| TC | HRGMv2_1719_13 | HRGMv2_1719_13_25 | 27676 | 28485 | + | 3.A.1.103.6 |
| TC | HRGMv2_1719_13 | HRGMv2_1719_13_26 | 28531 | 29313 | + | 3.A.1.103.1 |
| CAZyme | HRGMv2_1719_13 | HRGMv2_1719_13_27 | 29320 | 30591 | + | GT2 |
| TF | HRGMv2_1719_13 | HRGMv2_1719_13_28 | 30858 | 32621 | - | TrmB |
| CAZyme | HRGMv2_1719_13 | HRGMv2_1719_13_29 | 32847 | 34193 | - | GT4 |
| CAZyme | HRGMv2_1719_13 | HRGMv2_1719_13_30 | 34269 | 34946 | + | GT2 |
| pfam | HRGMv2_1719_13 | HRGMv2_1719_13_31 | 34997 | 35359 | + | DUF2304 |
| pfam | HRGMv2_1719_13 | HRGMv2_1719_13_32 | 35589 | 36878 | + | AAA_14 | DUF4143 |
| CAZyme | HRGMv2_1719_13 | HRGMv2_1719_13_33 | 36954 | 39683 | - | CBM13 | CBM13 | CBM13 |
| CAZyme | HRGMv2_1719_13 | HRGMv2_1719_13_34 | 40099 | 43176 | - | CBM13 | CBM13 | CBM13 | CBM13 | GH73 |
| CAZyme | HRGMv2_1719_13 | HRGMv2_1719_13_35 | 43201 | 45528 | - | CBM13 | CBM13 | CBM13 |
Gene ID: HRGMv2_1719_13_24
Type: TC
Location: 25996 - 27159 (-)
Type: TC
Location: 25996 - 27159 (-)
Gene ID: HRGMv2_1719_13_25
Type: TC
Location: 27676 - 28485 (+)
Type: TC
Location: 27676 - 28485 (+)
Gene ID: HRGMv2_1719_13_26
Type: TC
Location: 28531 - 29313 (+)
Type: TC
Location: 28531 - 29313 (+)
Gene ID: HRGMv2_1719_13_27
Type: CAZyme
Location: 29320 - 30591 (+)
Type: CAZyme
Location: 29320 - 30591 (+)
Gene ID: HRGMv2_1719_13_28
Type: TF
Location: 30858 - 32621 (-)
Type: TF
Location: 30858 - 32621 (-)
Gene ID: HRGMv2_1719_13_29
Type: CAZyme
Location: 32847 - 34193 (-)
Type: CAZyme
Location: 32847 - 34193 (-)
Gene ID: HRGMv2_1719_13_30
Type: CAZyme
Location: 34269 - 34946 (+)
Type: CAZyme
Location: 34269 - 34946 (+)
Gene ID: HRGMv2_1719_13_31
Type: pfam
Location: 34997 - 35359 (+)
Type: pfam
Location: 34997 - 35359 (+)
Gene ID: HRGMv2_1719_13_32
Type: pfam
Location: 35589 - 36878 (+)
Type: pfam
Location: 35589 - 36878 (+)
Gene ID: HRGMv2_1719_13_33
Type: CAZyme
Location: 36954 - 39683 (-)
Type: CAZyme
Location: 36954 - 39683 (-)
Gene ID: HRGMv2_1719_13_34
Type: CAZyme
Location: 40099 - 43176 (-)
Type: CAZyme
Location: 40099 - 43176 (-)
Gene ID: HRGMv2_1719_13_35
Type: CAZyme
Location: 43201 - 45528 (-)
Type: CAZyme
Location: 43201 - 45528 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Actinomycetota
Class
Coriobacteriia
Order
Coriobacteriales
Family
Eggerthellaceae
Genus
UMGS1502
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.