Cluster: HRGMv2_1717_CGC4
🧬 Cluster Details
- Gene Count: 7
- CAZyme Count: 3
- Substrate:
- Genome ID: HRGMv2_1717
- CGC Family ID: CGCFAM_00002
- Continent: Asia
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | HRGMv2_1717_2 | HRGMv2_1717_2_89 | 105178 | 106272 | + | GT2 |
| pfam | HRGMv2_1717_2 | HRGMv2_1717_2_90 | 106301 | 107398 | + | PS_pyruv_trans |
| pfam | HRGMv2_1717_2 | HRGMv2_1717_2_91 | 107391 | 108536 | + | PS_pyruv_trans |
| CAZyme | HRGMv2_1717_2 | HRGMv2_1717_2_92 | 108531 | 109562 | - | GT2 |
| pfam | HRGMv2_1717_2 | HRGMv2_1717_2_93 | 109559 | 110986 | - | Wzy_C |
| CAZyme | HRGMv2_1717_2 | HRGMv2_1717_2_94 | 110988 | 111830 | - | GT2 |
| TC | HRGMv2_1717_2 | HRGMv2_1717_2_95 | 111833 | 112609 | - | 9.B.18.1.2 |
Gene ID: HRGMv2_1717_2_89
Type: CAZyme
Location: 105178 - 106272 (+)
Type: CAZyme
Location: 105178 - 106272 (+)
Gene ID: HRGMv2_1717_2_90
Type: pfam
Location: 106301 - 107398 (+)
Type: pfam
Location: 106301 - 107398 (+)
Gene ID: HRGMv2_1717_2_91
Type: pfam
Location: 107391 - 108536 (+)
Type: pfam
Location: 107391 - 108536 (+)
Gene ID: HRGMv2_1717_2_92
Type: CAZyme
Location: 108531 - 109562 (-)
Type: CAZyme
Location: 108531 - 109562 (-)
Gene ID: HRGMv2_1717_2_93
Type: pfam
Location: 109559 - 110986 (-)
Type: pfam
Location: 109559 - 110986 (-)
Gene ID: HRGMv2_1717_2_94
Type: CAZyme
Location: 110988 - 111830 (-)
Type: CAZyme
Location: 110988 - 111830 (-)
Gene ID: HRGMv2_1717_2_95
Type: TC
Location: 111833 - 112609 (-)
Type: TC
Location: 111833 - 112609 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Actinomycetota
Class
Coriobacteriia
Order
Coriobacteriales
Family
Atopobiaceae
Genus
Coprovicinus
Species
Coprovicinus avistercoris
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.