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Cluster: HRGMv2_1715_CGC22

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC HRGMv2_1715_33 HRGMv2_1715_33_32 32529 32996 - 4.A.6.1.19
TC HRGMv2_1715_33 HRGMv2_1715_33_33 32993 33418 - 4.A.6.1.19
pfam HRGMv2_1715_33 HRGMv2_1715_33_34 33637 34494 + AP_endonuc_2
TC HRGMv2_1715_33 HRGMv2_1715_33_35 34631 35194 - 4.A.6.1.3
pfam HRGMv2_1715_33 HRGMv2_1715_33_36 35322 35507 - EIID-AGA
TC HRGMv2_1715_33 HRGMv2_1715_33_37 35526 36326 - 4.A.6.1.16
NULL(UNKNOWN) HRGMv2_1715_33 HRGMv2_1715_33_38 36618 36716 - NULL(UNKNOWN)
[View Structural Homologs]
pfam HRGMv2_1715_33 HRGMv2_1715_33_39 37411 40848 - DEAD | Helicase_C | CarD_TRCF_RID | TRCF | ResIII | UvrB_inter
CAZyme HRGMv2_1715_33 HRGMv2_1715_33_40 41169 44417 - GH13_39 | GH77
CAZyme HRGMv2_1715_33 HRGMv2_1715_33_41 44420 45886 - GT5
pfam HRGMv2_1715_33 HRGMv2_1715_33_42 45938 47032 - NTP_transferase | Hexapep_GlmU
pfam HRGMv2_1715_33 HRGMv2_1715_33_43 47035 48183 - NTP_transferase | Hexapep_GlmU
CAZyme HRGMv2_1715_33 HRGMv2_1715_33_44 48242 50674 - GT35
CAZyme HRGMv2_1715_33 HRGMv2_1715_33_45 50797 52956 - CBM48 | GH13_9
Gene ID: HRGMv2_1715_33_32
Type: TC
Location: 32529 - 32996 (-)
Gene ID: HRGMv2_1715_33_33
Type: TC
Location: 32993 - 33418 (-)
Gene ID: HRGMv2_1715_33_34
Type: pfam
Location: 33637 - 34494 (+)
Gene ID: HRGMv2_1715_33_35
Type: TC
Location: 34631 - 35194 (-)
Gene ID: HRGMv2_1715_33_36
Type: pfam
Location: 35322 - 35507 (-)
Gene ID: HRGMv2_1715_33_37
Type: TC
Location: 35526 - 36326 (-)
Gene ID: HRGMv2_1715_33_38
Type:
Location: 36618 - 36716 (-)
Gene ID: HRGMv2_1715_33_39
Type: pfam
Location: 37411 - 40848 (-)
Gene ID: HRGMv2_1715_33_40
Type: CAZyme
Location: 41169 - 44417 (-)
Gene ID: HRGMv2_1715_33_41
Type: CAZyme
Location: 44420 - 45886 (-)
Gene ID: HRGMv2_1715_33_42
Type: pfam
Location: 45938 - 47032 (-)
Gene ID: HRGMv2_1715_33_43
Type: pfam
Location: 47035 - 48183 (-)
Gene ID: HRGMv2_1715_33_44
Type: CAZyme
Location: 48242 - 50674 (-)
Gene ID: HRGMv2_1715_33_45
Type: CAZyme
Location: 50797 - 52956 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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