Cluster: HRGMv2_1698_CGC10
🧬 Cluster Details
- Gene Count: 4
- CAZyme Count: 2
- Substrate:
- Genome ID: HRGMv2_1698
- CGC Family ID: CGCFAM_00011
- Continent: NA
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | HRGMv2_1698_1 | HRGMv2_1698_1_1710 | 2037438 | 2038592 | + | GT2 |
| CAZyme | HRGMv2_1698_1 | HRGMv2_1698_1_1711 | 2038610 | 2039836 | + | GT4 |
| TC | HRGMv2_1698_1 | HRGMv2_1698_1_1712 | 2039844 | 2040635 | - | 3.A.1.103.1 |
| TC | HRGMv2_1698_1 | HRGMv2_1698_1_1713 | 2040644 | 2041438 | - | 3.A.1.103.4 |
Gene ID: HRGMv2_1698_1_1710
Type: CAZyme
Location: 2037438 - 2038592 (+)
Type: CAZyme
Location: 2037438 - 2038592 (+)
Gene ID: HRGMv2_1698_1_1711
Type: CAZyme
Location: 2038610 - 2039836 (+)
Type: CAZyme
Location: 2038610 - 2039836 (+)
Gene ID: HRGMv2_1698_1_1712
Type: TC
Location: 2039844 - 2040635 (-)
Type: TC
Location: 2039844 - 2040635 (-)
Gene ID: HRGMv2_1698_1_1713
Type: TC
Location: 2040644 - 2041438 (-)
Type: TC
Location: 2040644 - 2041438 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Actinomycetota
Class
Coriobacteriia
Order
Coriobacteriales
Family
QAMH01
Genus
QAMH01
Species
QAMH01 sp025992705
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| HRGMv2_1698_1_1712 | omnivore > vegan | 3.98486 | 0.01865 |