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Cluster: HRGMv2_1697_CGC2

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme HRGMv2_1697_5 HRGMv2_1697_5_26 25936 28086 - GT51
STP HRGMv2_1697_5 HRGMv2_1697_5_27 28333 28500 + Fer4 | Fer4
pfam HRGMv2_1697_5 HRGMv2_1697_5_28 28584 29918 + tRNA_U5-meth_tr | tRNA_U5-meth_tr
TC HRGMv2_1697_5 HRGMv2_1697_5_29 30129 30659 + 3.D.1.8.1
STP HRGMv2_1697_5 HRGMv2_1697_5_30 30693 32369 + TPR_1 | TPR_1 | TPR_1
pfam HRGMv2_1697_5 HRGMv2_1697_5_31 32433 32834 + NDK
TC HRGMv2_1697_5 HRGMv2_1697_5_32 33021 34061 + 1.A.33.1.5
Gene ID: HRGMv2_1697_5_26
Type: CAZyme
Location: 25936 - 28086 (-)
Gene ID: HRGMv2_1697_5_27
Type: STP
Location: 28333 - 28500 (+)
Gene ID: HRGMv2_1697_5_28
Type: pfam
Location: 28584 - 29918 (+)
Gene ID: HRGMv2_1697_5_29
Type: TC
Location: 30129 - 30659 (+)
Gene ID: HRGMv2_1697_5_30
Type: STP
Location: 30693 - 32369 (+)
Gene ID: HRGMv2_1697_5_31
Type: pfam
Location: 32433 - 32834 (+)
Gene ID: HRGMv2_1697_5_32
Type: TC
Location: 33021 - 34061 (+)

Taxonomic Lineage

Domain
Bacteria
→
Phylum
Actinomycetota
→
Class
Coriobacteriia
→
Order
Coriobacteriales
→
Family
QAMH01
→
Genus
QAMH01
→
Species
QAMH01 sp902493755

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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Differentially Abundant Genes

Gene ID Condition Pair log2FC FDR P-value
HRGMv2_1697_5_29 omnivore > vegan 3.49014 0.04575

🧭 Explore Read Mapping of CGC

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