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Cluster: HRGMv2_1692_CGC9

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC HRGMv2_1692_37 HRGMv2_1692_37_3 1539 4112 + 3.A.1.33.1
pfam HRGMv2_1692_37 HRGMv2_1692_37_4 4138 4962 + PseudoU_synth_1 | PseudoU_synth_1
CAZyme HRGMv2_1692_37 HRGMv2_1692_37_5 5122 6192 + GT2
TF HRGMv2_1692_37 HRGMv2_1692_37_6 6334 6771 + Arg_repressor
CAZyme HRGMv2_1692_37 HRGMv2_1692_37_7 6950 9124 - GT51
NULL(UNKNOWN) HRGMv2_1692_37 HRGMv2_1692_37_8 9347 11056 + NULL(UNKNOWN)
[View Structural Homologs]
pfam HRGMv2_1692_37 HRGMv2_1692_37_9 11245 12459 + tRNA-synt_1b | S4
CAZyme HRGMv2_1692_37 HRGMv2_1692_37_10 12593 13603 + GT2
Gene ID: HRGMv2_1692_37_3
Type: TC
Location: 1539 - 4112 (+)
Gene ID: HRGMv2_1692_37_4
Type: pfam
Location: 4138 - 4962 (+)
Gene ID: HRGMv2_1692_37_5
Type: CAZyme
Location: 5122 - 6192 (+)
Gene ID: HRGMv2_1692_37_6
Type: TF
Location: 6334 - 6771 (+)
Gene ID: HRGMv2_1692_37_7
Type: CAZyme
Location: 6950 - 9124 (-)
Gene ID: HRGMv2_1692_37_8
Type:
Location: 9347 - 11056 (+)
Gene ID: HRGMv2_1692_37_9
Type: pfam
Location: 11245 - 12459 (+)
Gene ID: HRGMv2_1692_37_10
Type: CAZyme
Location: 12593 - 13603 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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