dbCAN Logo

Cluster: HRGMv2_1692_CGC1

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC HRGMv2_1692_1 HRGMv2_1692_1_27 35374 36288 + 3.A.1.1.47
TC HRGMv2_1692_1 HRGMv2_1692_1_28 36299 37162 + 3.A.1.1.34
CAZyme HRGMv2_1692_1 HRGMv2_1692_1_29 37271 39622 + GH65
CAZyme HRGMv2_1692_1 HRGMv2_1692_1_30 39619 42030 + GH13_31
TC HRGMv2_1692_1 HRGMv2_1692_1_31 42034 43143 + 3.A.1.1.26
pfam HRGMv2_1692_1 HRGMv2_1692_1_32 43405 45087 - S1CSD-TOTE-2 | S1CSD-TOTE-2
NULL(UNKNOWN) HRGMv2_1692_1 HRGMv2_1692_1_33 45348 47018 + NULL(UNKNOWN)
[View Structural Homologs]
CAZyme HRGMv2_1692_1 HRGMv2_1692_1_34 47015 48028 + GT2
pfam HRGMv2_1692_1 HRGMv2_1692_1_35 48037 51690 + DEAD | Helicase_C | CarD_TRCF_RID | TRCF | ResIII | UvrB_inter
pfam HRGMv2_1692_1 HRGMv2_1692_1_36 51882 52880 - YitT_membrane | DUF2179
TC HRGMv2_1692_1 HRGMv2_1692_1_37 53047 55119 + 2.A.16.2.2
Gene ID: HRGMv2_1692_1_27
Type: TC
Location: 35374 - 36288 (+)
Gene ID: HRGMv2_1692_1_28
Type: TC
Location: 36299 - 37162 (+)
Gene ID: HRGMv2_1692_1_29
Type: CAZyme
Location: 37271 - 39622 (+)
Gene ID: HRGMv2_1692_1_30
Type: CAZyme
Location: 39619 - 42030 (+)
Gene ID: HRGMv2_1692_1_31
Type: TC
Location: 42034 - 43143 (+)
Gene ID: HRGMv2_1692_1_32
Type: pfam
Location: 43405 - 45087 (-)
Gene ID: HRGMv2_1692_1_33
Type:
Location: 45348 - 47018 (+)
Gene ID: HRGMv2_1692_1_34
Type: CAZyme
Location: 47015 - 48028 (+)
Gene ID: HRGMv2_1692_1_35
Type: pfam
Location: 48037 - 51690 (+)
Gene ID: HRGMv2_1692_1_36
Type: pfam
Location: 51882 - 52880 (-)
Gene ID: HRGMv2_1692_1_37
Type: TC
Location: 53047 - 55119 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

Loading chart...

Differentially Abundant Genes

Gene ID Condition Pair log2FC FDR P-value
HRGMv2_1692_1_36 vegetarian > vegan 1.97753 0.00782

🧭 Explore Read Mapping of CGC

← Back to Cluster List