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Cluster: HRGMv2_1683_CGC1

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme HRGMv2_1683_1 HRGMv2_1683_1_76 85481 86662 + CE9
TC HRGMv2_1683_1 HRGMv2_1683_1_77 86954 87739 + 4.A.6.1.13
TC HRGMv2_1683_1 HRGMv2_1683_1_78 87726 88532 + 4.A.6.1.13
TC HRGMv2_1683_1 HRGMv2_1683_1_79 88557 89057 + 4.A.6.1.18
STP HRGMv2_1683_1 HRGMv2_1683_1_80 89237 89950 + SIS
pfam HRGMv2_1683_1 HRGMv2_1683_1_81 90023 91204 + Trigger_C
TC HRGMv2_1683_1 HRGMv2_1683_1_82 91267 91695 + 4.A.6.1.14
Gene ID: HRGMv2_1683_1_76
Type: CAZyme
Location: 85481 - 86662 (+)
Gene ID: HRGMv2_1683_1_77
Type: TC
Location: 86954 - 87739 (+)
Gene ID: HRGMv2_1683_1_78
Type: TC
Location: 87726 - 88532 (+)
Gene ID: HRGMv2_1683_1_79
Type: TC
Location: 88557 - 89057 (+)
Gene ID: HRGMv2_1683_1_80
Type: STP
Location: 89237 - 89950 (+)
Gene ID: HRGMv2_1683_1_81
Type: pfam
Location: 90023 - 91204 (+)
Gene ID: HRGMv2_1683_1_82
Type: TC
Location: 91267 - 91695 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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Differentially Abundant Genes

Gene ID Condition Pair log2FC FDR P-value
HRGMv2_1683_1_80 vegetarian > omnivore 2.43150 0.03116
HRGMv2_1683_1_80 vegetarian > vegan 20.19755 0.00565

🧭 Explore Read Mapping of CGC

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