Cluster: HRGMv2_1677_CGC3
🧬 Cluster Details
- Gene Count: 6
- CAZyme Count: 1
- Substrate:
- Genome ID: HRGMv2_1677
- CGC Family ID: CGCFAM_02454
- Continent: Europe
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_1677_3 | HRGMv2_1677_3_61 | 65683 | 66084 | - | 4.A.6.1.1 |
| CAZyme | HRGMv2_1677_3 | HRGMv2_1677_3_62 | 66304 | 67488 | - | CE9 |
| TF | HRGMv2_1677_3 | HRGMv2_1677_3_63 | 67692 | 68426 | + | GntR |
| pfam | HRGMv2_1677_3 | HRGMv2_1677_3_64 | 68577 | 68996 | + | RbsD_FucU |
| TC | HRGMv2_1677_3 | HRGMv2_1677_3_65 | 69226 | 69723 | + | 4.A.1.1.1 |
| TC | HRGMv2_1677_3 | HRGMv2_1677_3_66 | 70048 | 71550 | - | 4.A.1.1.7 |
Gene ID: HRGMv2_1677_3_61
Type: TC
Location: 65683 - 66084 (-)
Type: TC
Location: 65683 - 66084 (-)
Gene ID: HRGMv2_1677_3_62
Type: CAZyme
Location: 66304 - 67488 (-)
Type: CAZyme
Location: 66304 - 67488 (-)
Gene ID: HRGMv2_1677_3_63
Type: TF
Location: 67692 - 68426 (+)
Type: TF
Location: 67692 - 68426 (+)
Gene ID: HRGMv2_1677_3_64
Type: pfam
Location: 68577 - 68996 (+)
Type: pfam
Location: 68577 - 68996 (+)
Gene ID: HRGMv2_1677_3_65
Type: TC
Location: 69226 - 69723 (+)
Type: TC
Location: 69226 - 69723 (+)
Gene ID: HRGMv2_1677_3_66
Type: TC
Location: 70048 - 71550 (-)
Type: TC
Location: 70048 - 71550 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Actinomycetota
Class
Coriobacteriia
Order
Coriobacteriales
Family
Atopobiaceae
Genus
Parolsenella
Species
Parolsenella sp900544655
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
Loading chart...
Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| HRGMv2_1677_3_64 | vegetarian > omnivore | 2.47189 | 0.01904 |
| HRGMv2_1677_3_64 | vegetarian > vegan | 4.65615 | 0.01604 |