dbCAN Logo

Cluster: HRGMv2_1677_CGC1

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC HRGMv2_1677_1 HRGMv2_1677_1_5 4609 5493 + 3.A.1.3.13
TC HRGMv2_1677_1 HRGMv2_1677_1_6 5511 6212 + 3.A.1.3.11
TC HRGMv2_1677_1 HRGMv2_1677_1_7 6225 6953 + 3.A.1.3.13
TC HRGMv2_1677_1 HRGMv2_1677_1_8 6980 7786 + 3.A.1.3.14
STP HRGMv2_1677_1 HRGMv2_1677_1_9 7800 9482 + Ammonium_transp
STP HRGMv2_1677_1 HRGMv2_1677_1_10 9576 10781 + Aminotran_1_2
TC HRGMv2_1677_1 HRGMv2_1677_1_11 11133 13919 - 4.A.2.1.17
TF HRGMv2_1677_1 HRGMv2_1677_1_12 14440 14922 + MarR
TC HRGMv2_1677_1 HRGMv2_1677_1_13 14915 16645 + 3.A.1.135.5
TC HRGMv2_1677_1 HRGMv2_1677_1_14 16645 18495 + 3.A.1.135.5
CAZyme HRGMv2_1677_1 HRGMv2_1677_1_15 18548 19609 + GH5_44
pfam HRGMv2_1677_1 HRGMv2_1677_1_16 19622 20527 + TP_methylase
NULL(UNKNOWN) HRGMv2_1677_1 HRGMv2_1677_1_17 20600 20767 - NULL(UNKNOWN)
[View Structural Homologs]
TC HRGMv2_1677_1 HRGMv2_1677_1_18 20956 21615 - 3.A.3.1.8
STP HRGMv2_1677_1 HRGMv2_1677_1_19 21624 22277 - TrkA_C
TC HRGMv2_1677_1 HRGMv2_1677_1_20 22280 25147 - 3.A.3.1.8
Gene ID: HRGMv2_1677_1_5
Type: TC
Location: 4609 - 5493 (+)
Gene ID: HRGMv2_1677_1_6
Type: TC
Location: 5511 - 6212 (+)
Gene ID: HRGMv2_1677_1_7
Type: TC
Location: 6225 - 6953 (+)
Gene ID: HRGMv2_1677_1_8
Type: TC
Location: 6980 - 7786 (+)
Gene ID: HRGMv2_1677_1_9
Type: STP
Location: 7800 - 9482 (+)
Gene ID: HRGMv2_1677_1_10
Type: STP
Location: 9576 - 10781 (+)
Gene ID: HRGMv2_1677_1_11
Type: TC
Location: 11133 - 13919 (-)
Gene ID: HRGMv2_1677_1_12
Type: TF
Location: 14440 - 14922 (+)
Gene ID: HRGMv2_1677_1_13
Type: TC
Location: 14915 - 16645 (+)
Gene ID: HRGMv2_1677_1_14
Type: TC
Location: 16645 - 18495 (+)
Gene ID: HRGMv2_1677_1_15
Type: CAZyme
Location: 18548 - 19609 (+)
Gene ID: HRGMv2_1677_1_16
Type: pfam
Location: 19622 - 20527 (+)
Gene ID: HRGMv2_1677_1_17
Type:
Location: 20600 - 20767 (-)
Gene ID: HRGMv2_1677_1_18
Type: TC
Location: 20956 - 21615 (-)
Gene ID: HRGMv2_1677_1_19
Type: STP
Location: 21624 - 22277 (-)
Gene ID: HRGMv2_1677_1_20
Type: TC
Location: 22280 - 25147 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

Loading chart...

Differentially Abundant Genes

Gene ID Condition Pair log2FC FDR P-value
HRGMv2_1677_1_17 vegetarian > vegan 3.84927 0.01604
HRGMv2_1677_1_18 vegetarian > vegan 4.01435 0.01604
HRGMv2_1677_1_19 vegetarian > vegan 3.94938 0.01604
HRGMv2_1677_1_20 vegetarian > vegan 2.28706 0.01604

🧭 Explore Read Mapping of CGC

← Back to Cluster List