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Cluster: HRGMv2_1654_CGC4

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC HRGMv2_1654_1 HRGMv2_1654_1_268 292173 294587 + 5.A.3.3.2
CAZyme HRGMv2_1654_1 HRGMv2_1654_1_269 294643 295611 - GT2
NULL(UNKNOWN) HRGMv2_1654_1 HRGMv2_1654_1_270 295964 297232 + NULL(UNKNOWN)
[View Structural Homologs]
pfam HRGMv2_1654_1 HRGMv2_1654_1_271 297331 298461 - adh_short | 3Beta_HSD | Epimerase | Polysacc_synt_2 | RmlD_sub_bind | NAD_binding_4 | GDP_Man_Dehyd
TC HRGMv2_1654_1 HRGMv2_1654_1_272 298603 301200 + 5.A.3.3.2
TC HRGMv2_1654_1 HRGMv2_1654_1_273 301200 301841 + 5.A.3.10.1
pfam HRGMv2_1654_1 HRGMv2_1654_1_274 302178 302381 + Zn_Ribbon_1
TC HRGMv2_1654_1 HRGMv2_1654_1_275 302572 303393 + 3.A.1.3.27
TC HRGMv2_1654_1 HRGMv2_1654_1_276 303506 304840 + 3.A.1.3.16
TC HRGMv2_1654_1 HRGMv2_1654_1_277 304837 305655 + 3.A.1.3.25
Gene ID: HRGMv2_1654_1_268
Type: TC
Location: 292173 - 294587 (+)
Gene ID: HRGMv2_1654_1_269
Type: CAZyme
Location: 294643 - 295611 (-)
Gene ID: HRGMv2_1654_1_270
Type:
Location: 295964 - 297232 (+)
Gene ID: HRGMv2_1654_1_271
Type: pfam
Location: 297331 - 298461 (-)
Gene ID: HRGMv2_1654_1_272
Type: TC
Location: 298603 - 301200 (+)
Gene ID: HRGMv2_1654_1_273
Type: TC
Location: 301200 - 301841 (+)
Gene ID: HRGMv2_1654_1_274
Type: pfam
Location: 302178 - 302381 (+)
Gene ID: HRGMv2_1654_1_275
Type: TC
Location: 302572 - 303393 (+)
Gene ID: HRGMv2_1654_1_276
Type: TC
Location: 303506 - 304840 (+)
Gene ID: HRGMv2_1654_1_277
Type: TC
Location: 304837 - 305655 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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