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Cluster: HRGMv2_1652_CGC6

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC HRGMv2_1652_19 HRGMv2_1652_19_19 22818 23246 - 4.A.6.1.14
pfam HRGMv2_1652_19 HRGMv2_1652_19_20 23293 24477 - Trigger_C
STP HRGMv2_1652_19 HRGMv2_1652_19_21 24548 25261 - SIS
TC HRGMv2_1652_19 HRGMv2_1652_19_22 25446 25946 - 4.A.6.1.18
TC HRGMv2_1652_19 HRGMv2_1652_19_23 25970 26776 - 4.A.6.1.13
TC HRGMv2_1652_19 HRGMv2_1652_19_24 26763 27545 - 4.A.6.1.13
CAZyme HRGMv2_1652_19 HRGMv2_1652_19_25 27853 29034 - CE9
Gene ID: HRGMv2_1652_19_19
Type: TC
Location: 22818 - 23246 (-)
Gene ID: HRGMv2_1652_19_20
Type: pfam
Location: 23293 - 24477 (-)
Gene ID: HRGMv2_1652_19_21
Type: STP
Location: 24548 - 25261 (-)
Gene ID: HRGMv2_1652_19_22
Type: TC
Location: 25446 - 25946 (-)
Gene ID: HRGMv2_1652_19_23
Type: TC
Location: 25970 - 26776 (-)
Gene ID: HRGMv2_1652_19_24
Type: TC
Location: 26763 - 27545 (-)
Gene ID: HRGMv2_1652_19_25
Type: CAZyme
Location: 27853 - 29034 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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Differentially Abundant Genes

Gene ID Condition Pair log2FC FDR P-value
HRGMv2_1652_19_21 vegetarian > omnivore 2.18031 0.00861
HRGMv2_1652_19_21 vegetarian > vegan 19.49176 0.00565

🧭 Explore Read Mapping of CGC

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