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Cluster: HRGMv2_1649_CGC8

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme HRGMv2_1649_4 HRGMv2_1649_4_29 35255 36349 + GT2
NULL(UNKNOWN) HRGMv2_1649_4 HRGMv2_1649_4_30 36355 38169 + NULL(UNKNOWN)
[View Structural Homologs]
pfam HRGMv2_1649_4 HRGMv2_1649_4_31 38209 41148 - YfhO | YfhO
CAZyme HRGMv2_1649_4 HRGMv2_1649_4_32 41145 42125 - GT2
CAZyme HRGMv2_1649_4 HRGMv2_1649_4_33 42225 43394 + GT2
CAZyme HRGMv2_1649_4 HRGMv2_1649_4_34 43462 44523 + GT2
CAZyme HRGMv2_1649_4 HRGMv2_1649_4_35 44527 47187 + GT2 | GT2
TC HRGMv2_1649_4 HRGMv2_1649_4_36 47390 48175 + 3.A.1.103.6
TC HRGMv2_1649_4 HRGMv2_1649_4_37 48257 50116 + 3.A.1.103.5
CAZyme HRGMv2_1649_4 HRGMv2_1649_4_38 50195 52588 - GT2 | GT2
pfam HRGMv2_1649_4 HRGMv2_1649_4_39 52696 54255 - DUF2142
CAZyme HRGMv2_1649_4 HRGMv2_1649_4_40 54490 57675 + CBM13 | CBM13
CAZyme HRGMv2_1649_4 HRGMv2_1649_4_41 57700 60324 + CBM13 | CBM13
CAZyme HRGMv2_1649_4 HRGMv2_1649_4_42 60411 64238 + CBM13 | CBM13 | CBM13 | GH25
CAZyme HRGMv2_1649_4 HRGMv2_1649_4_43 64274 66805 + CBM13 | CBM13 | CBM13
CAZyme HRGMv2_1649_4 HRGMv2_1649_4_44 67154 67732 + GT101
pfam HRGMv2_1649_4 HRGMv2_1649_4_45 67828 69078 + Polysacc_synt
CAZyme HRGMv2_1649_4 HRGMv2_1649_4_46 69075 70121 - GT2
pfam HRGMv2_1649_4 HRGMv2_1649_4_47 70224 71225 + Stealth_CR2 | Stealth_CR1
CAZyme HRGMv2_1649_4 HRGMv2_1649_4_48 71231 72349 - GT4
CAZyme HRGMv2_1649_4 HRGMv2_1649_4_49 72342 73502 - GT4
CAZyme HRGMv2_1649_4 HRGMv2_1649_4_50 73520 74278 + GT2
Gene ID: HRGMv2_1649_4_29
Type: CAZyme
Location: 35255 - 36349 (+)
Gene ID: HRGMv2_1649_4_30
Type:
Location: 36355 - 38169 (+)
Gene ID: HRGMv2_1649_4_31
Type: pfam
Location: 38209 - 41148 (-)
Gene ID: HRGMv2_1649_4_32
Type: CAZyme
Location: 41145 - 42125 (-)
Gene ID: HRGMv2_1649_4_33
Type: CAZyme
Location: 42225 - 43394 (+)
Gene ID: HRGMv2_1649_4_34
Type: CAZyme
Location: 43462 - 44523 (+)
Gene ID: HRGMv2_1649_4_35
Type: CAZyme
Location: 44527 - 47187 (+)
Gene ID: HRGMv2_1649_4_36
Type: TC
Location: 47390 - 48175 (+)
Gene ID: HRGMv2_1649_4_37
Type: TC
Location: 48257 - 50116 (+)
Gene ID: HRGMv2_1649_4_38
Type: CAZyme
Location: 50195 - 52588 (-)
Gene ID: HRGMv2_1649_4_39
Type: pfam
Location: 52696 - 54255 (-)
Gene ID: HRGMv2_1649_4_40
Type: CAZyme
Location: 54490 - 57675 (+)
Gene ID: HRGMv2_1649_4_41
Type: CAZyme
Location: 57700 - 60324 (+)
Gene ID: HRGMv2_1649_4_42
Type: CAZyme
Location: 60411 - 64238 (+)
Gene ID: HRGMv2_1649_4_43
Type: CAZyme
Location: 64274 - 66805 (+)
Gene ID: HRGMv2_1649_4_44
Type: CAZyme
Location: 67154 - 67732 (+)
Gene ID: HRGMv2_1649_4_45
Type: pfam
Location: 67828 - 69078 (+)
Gene ID: HRGMv2_1649_4_46
Type: CAZyme
Location: 69075 - 70121 (-)
Gene ID: HRGMv2_1649_4_47
Type: pfam
Location: 70224 - 71225 (+)
Gene ID: HRGMv2_1649_4_48
Type: CAZyme
Location: 71231 - 72349 (-)
Gene ID: HRGMv2_1649_4_49
Type: CAZyme
Location: 72342 - 73502 (-)
Gene ID: HRGMv2_1649_4_50
Type: CAZyme
Location: 73520 - 74278 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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