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Cluster: HRGMv2_1640_CGC8

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC HRGMv2_1640_16 HRGMv2_1640_16_36 42944 44260 - 2.A.1.24.4
pfam HRGMv2_1640_16 HRGMv2_1640_16_37 44428 45429 + Zn_dep_PLPC
TC HRGMv2_1640_16 HRGMv2_1640_16_38 45534 47180 - 1.A.11.2.7
pfam HRGMv2_1640_16 HRGMv2_1640_16_39 47699 49621 + FAD_binding_2 | DAO | Thi4 | FMN_bind | Pyr_redox_2 | FAD_oxidored | NAD_binding_8
pfam HRGMv2_1640_16 HRGMv2_1640_16_40 49817 50947 - Aminotran_1_2 | DegT_DnrJ_EryC1
CAZyme HRGMv2_1640_16 HRGMv2_1640_16_41 50950 52593 - GH179
pfam HRGMv2_1640_16 HRGMv2_1640_16_42 52598 53947 - UDPG_MGDP_dh | NAD_binding_2 | UDPG_MGDP_dh_C | UDPG_MGDP_dh_N
CAZyme HRGMv2_1640_16 HRGMv2_1640_16_43 54096 55208 + GT4
Gene ID: HRGMv2_1640_16_36
Type: TC
Location: 42944 - 44260 (-)
Gene ID: HRGMv2_1640_16_37
Type: pfam
Location: 44428 - 45429 (+)
Gene ID: HRGMv2_1640_16_38
Type: TC
Location: 45534 - 47180 (-)
Gene ID: HRGMv2_1640_16_39
Type: pfam
Location: 47699 - 49621 (+)
Gene ID: HRGMv2_1640_16_40
Type: pfam
Location: 49817 - 50947 (-)
Gene ID: HRGMv2_1640_16_41
Type: CAZyme
Location: 50950 - 52593 (-)
Gene ID: HRGMv2_1640_16_42
Type: pfam
Location: 52598 - 53947 (-)
Gene ID: HRGMv2_1640_16_43
Type: CAZyme
Location: 54096 - 55208 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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