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Cluster: HRGMv2_1640_CGC6

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC HRGMv2_1640_12 HRGMv2_1640_12_10 9236 9772 - 5.A.3.3.1
TC HRGMv2_1640_12 HRGMv2_1640_12_11 9900 12320 - 5.A.3.3.2
TF HRGMv2_1640_12 HRGMv2_1640_12_12 12627 14072 + GerE
pfam HRGMv2_1640_12 HRGMv2_1640_12_13 14151 14903 + Nitrate_red_del
TC HRGMv2_1640_12 HRGMv2_1640_12_14 14981 15613 - 5.A.3.3.2
TC HRGMv2_1640_12 HRGMv2_1640_12_15 15630 18257 - 5.A.3.3.2
pfam HRGMv2_1640_12 HRGMv2_1640_12_16 18489 19346 + S6PP | Hydrolase_3
CAZyme HRGMv2_1640_12 HRGMv2_1640_12_17 19474 20172 + GH25
Gene ID: HRGMv2_1640_12_10
Type: TC
Location: 9236 - 9772 (-)
Gene ID: HRGMv2_1640_12_11
Type: TC
Location: 9900 - 12320 (-)
Gene ID: HRGMv2_1640_12_12
Type: TF
Location: 12627 - 14072 (+)
Gene ID: HRGMv2_1640_12_13
Type: pfam
Location: 14151 - 14903 (+)
Gene ID: HRGMv2_1640_12_14
Type: TC
Location: 14981 - 15613 (-)
Gene ID: HRGMv2_1640_12_15
Type: TC
Location: 15630 - 18257 (-)
Gene ID: HRGMv2_1640_12_16
Type: pfam
Location: 18489 - 19346 (+)
Gene ID: HRGMv2_1640_12_17
Type: CAZyme
Location: 19474 - 20172 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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