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Cluster: HRGMv2_1640_CGC2

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC HRGMv2_1640_1 HRGMv2_1640_1_234 285833 287221 - 2.A.8.1.6
TC HRGMv2_1640_1 HRGMv2_1640_1_235 287374 288741 - 9.B.18.1.1
CAZyme HRGMv2_1640_1 HRGMv2_1640_1_236 288880 289992 + GT4
CAZyme HRGMv2_1640_1 HRGMv2_1640_1_237 290111 291196 + GT4
CAZyme HRGMv2_1640_1 HRGMv2_1640_1_238 291564 292526 + GT2
pfam HRGMv2_1640_1 HRGMv2_1640_1_239 292974 293396 + CTP_transf_like
CAZyme HRGMv2_1640_1 HRGMv2_1640_1_240 293401 294420 + GT2
CAZyme HRGMv2_1640_1 HRGMv2_1640_1_241 294421 297033 + GT2
pfam HRGMv2_1640_1 HRGMv2_1640_1_242 297217 298353 - Acyl_transf_3
CAZyme HRGMv2_1640_1 HRGMv2_1640_1_243 298506 299570 + GT2
pfam HRGMv2_1640_1 HRGMv2_1640_1_244 299688 300455 + ABC2_membrane
TC HRGMv2_1640_1 HRGMv2_1640_1_245 300465 301796 + 3.A.1.103.5
Gene ID: HRGMv2_1640_1_234
Type: TC
Location: 285833 - 287221 (-)
Gene ID: HRGMv2_1640_1_235
Type: TC
Location: 287374 - 288741 (-)
Gene ID: HRGMv2_1640_1_236
Type: CAZyme
Location: 288880 - 289992 (+)
Gene ID: HRGMv2_1640_1_237
Type: CAZyme
Location: 290111 - 291196 (+)
Gene ID: HRGMv2_1640_1_238
Type: CAZyme
Location: 291564 - 292526 (+)
Gene ID: HRGMv2_1640_1_239
Type: pfam
Location: 292974 - 293396 (+)
Gene ID: HRGMv2_1640_1_240
Type: CAZyme
Location: 293401 - 294420 (+)
Gene ID: HRGMv2_1640_1_241
Type: CAZyme
Location: 294421 - 297033 (+)
Gene ID: HRGMv2_1640_1_242
Type: pfam
Location: 297217 - 298353 (-)
Gene ID: HRGMv2_1640_1_243
Type: CAZyme
Location: 298506 - 299570 (+)
Gene ID: HRGMv2_1640_1_244
Type: pfam
Location: 299688 - 300455 (+)
Gene ID: HRGMv2_1640_1_245
Type: TC
Location: 300465 - 301796 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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